Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG372_RS33305 Genome accession   NZ_CP108681
Coordinates   7490023..7490625 (+) Length   200 a.a.
NCBI ID   WP_328379634.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01020     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7485023..7495625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG372_RS33285 (OG372_33265) - 7485390..7485905 (-) 516 WP_266850626.1 lytic polysaccharide monooxygenase auxiliary activity family 9 protein -
  OG372_RS33290 (OG372_33270) - 7486375..7487193 (+) 819 WP_405754784.1 MIP/aquaporin family protein -
  OG372_RS33295 (OG372_33275) - 7487533..7489170 (+) 1638 WP_405754786.1 alpha-L-fucosidase -
  OG372_RS33300 (OG372_33280) clpP 7489344..7490000 (+) 657 WP_266850620.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG372_RS33305 (OG372_33285) clpP 7490023..7490625 (+) 603 WP_328379634.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG372_RS33310 (OG372_33290) - 7490761..7491300 (-) 540 WP_405754790.1 helix-turn-helix domain-containing protein -
  OG372_RS33315 (OG372_33295) - 7491408..7492583 (-) 1176 WP_401609009.1 4-hydroxybenzoate 3-monooxygenase -
  OG372_RS33320 (OG372_33300) pcaC 7492667..7493827 (-) 1161 WP_406071660.1 4-carboxymuconolactone decarboxylase -
  OG372_RS33325 (OG372_33305) pcaB 7493824..7495167 (-) 1344 WP_328380455.1 3-carboxy-cis,cis-muconate cycloisomerase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21764.55 Da        Isoelectric Point: 5.0497

>NTDB_id=665091 OG372_RS33305 WP_328379634.1 7490023..7490625(+) (clpP) [Streptomyces sp. NBC_01020]
MSQYTIPNVVERTPQGERSYDVFSRLLSERIIFIGTEIDDGVANVVIAQLLHLESSGQETEISIYINSPGGSVTSLMAIY
DTMTFVNSPISTFCVGQAASTAAVLLAGGDPGRRFVLDHARVLLGQPASGGQQGTVSDLSLRAKEMLRIRSEIEEVLSRH
THHEISELRADMDRDKVFTAREAVAYGLADQVLSRRNAAA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=665091 OG372_RS33305 WP_328379634.1 7490023..7490625(+) (clpP) [Streptomyces sp. NBC_01020]
ATGAGCCAGTACACGATCCCGAACGTCGTCGAGCGCACCCCGCAGGGGGAGCGGTCCTACGACGTCTTCAGCAGGCTGCT
CTCCGAGCGGATCATCTTCATCGGCACCGAGATCGACGACGGCGTGGCCAATGTCGTCATCGCACAGCTGCTGCACCTGG
AGTCGTCCGGCCAGGAGACCGAGATCTCCATCTACATCAACTCACCGGGTGGATCGGTCACTTCACTGATGGCCATCTAC
GACACGATGACCTTCGTCAACTCGCCCATCTCGACCTTCTGCGTCGGCCAGGCGGCCTCGACCGCGGCGGTGCTGCTCGC
CGGCGGGGACCCCGGGCGGCGCTTCGTCCTCGACCACGCACGGGTCCTGCTGGGGCAGCCTGCGAGCGGCGGCCAGCAGG
GCACGGTATCCGATCTCAGCCTGCGGGCGAAGGAGATGCTCCGGATCCGCTCGGAGATCGAGGAGGTGCTCTCCCGGCAC
ACGCACCACGAGATCTCCGAACTGCGCGCCGACATGGACCGCGACAAGGTCTTCACCGCACGCGAAGCCGTCGCGTACGG
GCTCGCCGACCAGGTGCTCAGCCGCCGGAACGCAGCCGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.619

94.5

0.45
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

43.684

95

0.415
  clpP Streptococcus mutans UA159

40.212

94.5

0.38
  clpP Lactococcus lactis subsp. cremoris KW2

38.22

95.5

0.365
  clpP Streptococcus pyogenes MGAS315

38.624

94.5

0.365
  clpP Streptococcus pyogenes JRS4

38.624

94.5

0.365
  clpP Streptococcus pneumoniae Rx1

37.5

96

0.36
  clpP Streptococcus pneumoniae D39

37.5

96

0.36
  clpP Streptococcus pneumoniae R6

37.5

96

0.36
  clpP Streptococcus pneumoniae TIGR4

37.5

96

0.36
  clpP Streptococcus thermophilus LMG 18311

37.5

96

0.36
  clpP Streptococcus thermophilus LMD-9

37.5

96

0.36