NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG372_RS33300	Genome accession	NZ_CP108681
Coordinates	7489344..7490000 (+)	Length	218 a.a.
NCBI ID	WP_266850620.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01020
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 7484344..7495000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG372_RS33280 (OG372_33260)	-	7484514..7485260 (+)	747	WP_328379632.1	anti-sigma factor	-
OG372_RS33285 (OG372_33265)	-	7485390..7485905 (-)	516	WP_266850626.1	lytic polysaccharide monooxygenase auxiliary activity family 9 protein	-
OG372_RS33290 (OG372_33270)	-	7486375..7487193 (+)	819	WP_405754784.1	MIP/aquaporin family protein	-
OG372_RS33295 (OG372_33275)	-	7487533..7489170 (+)	1638	WP_405754786.1	alpha-L-fucosidase	-
OG372_RS33300 (OG372_33280)	clpP	7489344..7490000 (+)	657	WP_266850620.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG372_RS33305 (OG372_33285)	clpP	7490023..7490625 (+)	603	WP_328379634.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG372_RS33310 (OG372_33290)	-	7490761..7491300 (-)	540	WP_405754790.1	helix-turn-helix domain-containing protein	-
OG372_RS33315 (OG372_33295)	-	7491408..7492583 (-)	1176	WP_401609009.1	4-hydroxybenzoate 3-monooxygenase	-
OG372_RS33320 (OG372_33300)	pcaC	7492667..7493827 (-)	1161	WP_406071660.1	4-carboxymuconolactone decarboxylase	-

Sequence

Protein

Download Length: 218 a.a. Molecular weight: 23454.51 Da Isoelectric Point: 4.8891

                                >NTDB_id=665090 OG372_RS33300 WP_266850620.1 7489344..7490000(+) (clpP) [Streptomyces sp. NBC_01020]

MSTPATGWGTALAPRASDDDSTPATRFDDHLAAQLLMQRIVMLGTQVDEVSANRVCAQLLLLSAEDPKTDISLYINSPGG

SVTAGLAIYDTMRLIPNDVSTLVMGFAASMGQFLLTVGSQGKRFALPNARIMMHQPSAGIGGTAADIAIQAENLEFTKKS

IERITAEHTGQSEETISRDGDRDRWFTAEQAKEYGMVDRVVESLGDVRPAGPRRRTGL

Nucleotide

Download Length: 657 bp

                                >NTDB_id=665090 OG372_RS33300 WP_266850620.1 7489344..7490000(+) (clpP) [Streptomyces sp. NBC_01020]

ATGTCAACTCCCGCTACCGGCTGGGGCACCGCCCTCGCCCCCCGAGCGTCCGACGACGACAGCACACCCGCCACCCGCTT

CGACGACCATCTGGCCGCACAGCTCCTGATGCAGCGCATCGTCATGCTCGGCACACAGGTCGACGAGGTGTCGGCCAACC

GCGTCTGCGCCCAGCTGCTCCTGCTGTCGGCGGAGGACCCGAAGACCGACATCAGCCTGTACATCAACAGCCCCGGCGGC

TCGGTGACGGCCGGGCTGGCGATCTACGACACCATGCGGCTCATCCCGAACGACGTCTCCACCCTCGTGATGGGATTCGC

CGCCAGCATGGGCCAGTTCCTGCTCACGGTCGGGTCGCAGGGCAAGCGCTTCGCACTGCCGAACGCGCGGATCATGATGC

ACCAGCCGTCGGCCGGTATCGGCGGGACTGCCGCGGATATCGCGATCCAGGCGGAGAACCTCGAATTCACCAAGAAGTCC

ATCGAACGGATCACCGCCGAGCACACCGGCCAGAGCGAGGAGACGATCTCCCGCGACGGTGACCGCGACCGCTGGTTCAC

GGCGGAGCAGGCCAAGGAGTACGGCATGGTGGACCGGGTCGTGGAGTCGCTCGGCGATGTCCGGCCGGCCGGTCCGCGGC

GACGGACGGGGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-202)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Lactococcus lactis subsp. cremoris KW2	45.876	88.991	0.408
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	45.361	88.991	0.404
clpP	Bacillus subtilis subsp. subtilis str. 168	51.462	78.44	0.404
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50.581	78.899	0.399
clpP	Streptococcus pneumoniae TIGR4	49.711	79.358	0.394
clpP	Streptococcus pneumoniae Rx1	49.711	79.358	0.394
clpP	Streptococcus pneumoniae D39	49.711	79.358	0.394
clpP	Streptococcus pneumoniae R6	49.711	79.358	0.394
clpP	Streptococcus pyogenes JRS4	48	80.275	0.385
clpP	Streptococcus pyogenes MGAS315	48	80.275	0.385
clpP	Streptococcus mutans UA159	47.429	80.275	0.381
clpP	Streptococcus thermophilus LMG 18311	47.399	79.358	0.376
clpP	Streptococcus thermophilus LMD-9	47.399	79.358	0.376

Detailed information NTG0665090