Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   MOV42_RS04690 Genome accession   NZ_CP093396
Coordinates   1018591..1018836 (+) Length   81 a.a.
NCBI ID   WP_324172630.1    Uniprot ID   -
Organism   MAG: Sulfurimonas sp. isolate MAG-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1013591..1023836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOV42_RS04675 - 1014378..1016507 (+) 2130 WP_324172627.1 STT3 domain-containing protein -
  MOV42_RS04680 - 1016513..1017304 (+) 792 WP_324172628.1 DNA ligase -
  MOV42_RS04685 - 1017316..1018518 (+) 1203 WP_324172629.1 glucose-6-phosphate isomerase -
  MOV42_RS04690 Cj0011c 1018591..1018836 (+) 246 WP_324172630.1 helix-hairpin-helix domain-containing protein Machinery gene
  MOV42_RS04695 - 1018892..1020259 (+) 1368 WP_324172631.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MOV42_RS04700 gmd 1020264..1021382 (+) 1119 WP_324172632.1 GDP-mannose 4,6-dehydratase -
  MOV42_RS04705 - 1021385..1022344 (+) 960 WP_324172633.1 GDP-L-fucose synthase -
  MOV42_RS04710 - 1022341..1023696 (+) 1356 WP_324172634.1 ATP-binding protein -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 8779.46 Da        Isoelectric Point: 10.4937

>NTDB_id=664363 MOV42_RS04690 WP_324172630.1 1018591..1018836(+) (Cj0011c) [MAG: Sulfurimonas sp. isolate MAG-2]
MKLFVMIILGFSLLFGSVDINTASKKELSSLNGIGTIKAEAIIAYRKTNCFKNVKELAKVKGIGNKTVEKNKSDLTASPC
K

Nucleotide


Download         Length: 246 bp        

>NTDB_id=664363 MOV42_RS04690 WP_324172630.1 1018591..1018836(+) (Cj0011c) [MAG: Sulfurimonas sp. isolate MAG-2]
ATGAAGTTATTTGTGATGATTATTTTAGGGTTTAGTTTATTGTTTGGAAGTGTTGATATTAACACCGCTTCAAAGAAAGA
GTTAAGTAGTTTAAATGGCATCGGAACTATAAAAGCAGAGGCAATTATTGCTTATAGAAAAACAAATTGTTTTAAAAATG
TAAAAGAACTTGCAAAAGTAAAAGGCATTGGTAATAAAACTGTTGAAAAAAATAAAAGTGATTTAACTGCAAGTCCTTGT
AAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.405

91.358

0.506
  comE Neisseria gonorrhoeae MS11

47.368

93.827

0.444
  comE Neisseria gonorrhoeae MS11

47.368

93.827

0.444
  comE Neisseria gonorrhoeae MS11

47.368

93.827

0.444
  comE Neisseria gonorrhoeae MS11

47.368

93.827

0.444
  comEA Legionella pneumophila strain ERS1305867

49.231

80.247

0.395
  comEA Legionella pneumophila str. Paris

49.231

80.247

0.395
  comEA Bacillus subtilis subsp. subtilis str. 168

51.667

74.074

0.383
  comEA Acinetobacter baumannii D1279779

48.387

76.543

0.37
  comEA Acinetobacter baylyi ADP1

50.847

72.84

0.37