Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   MNO09_RS16625 Genome accession   NZ_CP093325
Coordinates   2724578..2725159 (+) Length   193 a.a.
NCBI ID   WP_000991621.1    Uniprot ID   A0A4R4BLF5
Organism   Bacillus sp. N5-665     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2719578..2730159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS16590 (MNO09_16485) - 2720252..2720716 (-) 465 WP_000024964.1 hypothetical protein -
  MNO09_RS16595 (MNO09_16490) - 2721418..2721699 (+) 282 WP_002096532.1 hypothetical protein -
  MNO09_RS16600 (MNO09_16495) - 2721699..2722019 (+) 321 WP_070168880.1 hypothetical protein -
  MNO09_RS16605 (MNO09_16500) - 2722199..2722633 (-) 435 WP_000555722.1 GNAT family N-acetyltransferase -
  MNO09_RS16610 (MNO09_16505) rpiA 2722740..2723402 (-) 663 WP_033657767.1 ribose 5-phosphate isomerase A -
  MNO09_RS16615 (MNO09_16510) - 2723407..2723727 (-) 321 WP_001125372.1 2Fe-2S iron-sulfur cluster-binding protein -
  MNO09_RS16620 (MNO09_16515) - 2723870..2724556 (+) 687 WP_000337485.1 RNA polymerase subunit sigma-70 -
  MNO09_RS16625 (MNO09_16520) clpP 2724578..2725159 (+) 582 WP_000991621.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  MNO09_RS16630 (MNO09_16525) - 2725204..2726061 (-) 858 WP_000727304.1 glycine betaine ABC transporter substrate-binding protein -
  MNO09_RS16635 (MNO09_16530) - 2726233..2727438 (+) 1206 WP_000370615.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  MNO09_RS16640 (MNO09_16535) - 2727431..2728267 (+) 837 WP_000095063.1 proline/glycine betaine ABC transporter permease -
  MNO09_RS16645 (MNO09_16540) - 2728316..2728552 (-) 237 WP_000553347.1 hypothetical protein -
  MNO09_RS16650 (MNO09_16545) - 2728770..2728937 (+) 168 WP_000508399.1 hypothetical protein -
  MNO09_RS16655 (MNO09_16550) - 2729044..2729529 (+) 486 WP_000367659.1 HIT family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21275.49 Da        Isoelectric Point: 4.9215

>NTDB_id=663611 MNO09_RS16625 WP_000991621.1 2724578..2725159(+) (clpP) [Bacillus sp. N5-665]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKRDINKMIAEKTGQ
SIERVAHDTERDYFMTAEEAKEYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=663611 MNO09_RS16625 WP_000991621.1 2724578..2725159(+) (clpP) [Bacillus sp. N5-665]
ATGAATGCAATTCCATATGTAGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGCATTATTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCGG
AAGATGCAGAGAAAGATATATATTTATACATCAATAGCCCAGGTGGTTCAACAACAGCGGGTTTTGCCATATTAGATACG
ATGAATCTCATTAAACCAGATGTACAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCGCTCCCTAACAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGCCAGGCAA
CAGAAATTGAAATAACAGCGAAAAGAATACTAAAGTTAAAGCGTGATATTAATAAAATGATTGCAGAAAAAACGGGGCAA
TCAATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCTGAAGAAGCGAAAGAATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R4BLF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.586

98.964

0.679
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.254

97.927

0.668
  clpP Streptococcus pneumoniae Rx1

56.771

99.482

0.565
  clpP Streptococcus pneumoniae D39

56.771

99.482

0.565
  clpP Streptococcus pneumoniae R6

56.771

99.482

0.565
  clpP Streptococcus pneumoniae TIGR4

56.771

99.482

0.565
  clpP Streptococcus thermophilus LMG 18311

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMD-9

55.729

99.482

0.554
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

54.497

97.927

0.534
  clpP Lactococcus lactis subsp. cremoris KW2

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

97.927

0.508