Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG708_RS32890 Genome accession   NZ_CP108591
Coordinates   7196494..7197096 (+) Length   200 a.a.
NCBI ID   WP_327293891.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01180     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7191494..7202096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG708_RS32870 - 7192529..7192579 (+) 51 Protein_6488 hypothetical protein -
  OG708_RS32875 (OG708_32810) - 7192874..7193689 (+) 816 WP_327293894.1 MIP/aquaporin family protein -
  OG708_RS32880 (OG708_32815) - 7194016..7195653 (+) 1638 WP_327293893.1 alpha-L-fucosidase -
  OG708_RS32885 (OG708_32820) clpP 7195815..7196471 (+) 657 WP_327293892.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG708_RS32890 (OG708_32825) clpP 7196494..7197096 (+) 603 WP_327293891.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG708_RS32895 (OG708_32830) - 7197330..7197707 (-) 378 Protein_6493 helix-turn-helix domain-containing protein -
  OG708_RS32900 (OG708_32835) - 7197815..7198990 (-) 1176 WP_327293890.1 4-hydroxybenzoate 3-monooxygenase -
  OG708_RS32905 (OG708_32840) pcaC 7199057..7200217 (-) 1161 WP_327293889.1 4-carboxymuconolactone decarboxylase -
  OG708_RS32910 (OG708_32845) pcaB 7200214..7201551 (-) 1338 WP_327299482.1 3-carboxy-cis,cis-muconate cycloisomerase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21782.57 Da        Isoelectric Point: 4.8961

>NTDB_id=663610 OG708_RS32890 WP_327293891.1 7196494..7197096(+) (clpP) [Streptomyces sp. NBC_01180]
MSQYTIPNVVERTPQGERSYDVFSRLLSERIIFIGTEIDDGVANVVIAQLLHLESSSQETEISIYINSPGGSVTSLMAIY
DTMTFVSSPISTFCVGQAASTAAVLLAGGDPGRRFVLDHARVLLGQPASGGEQGTVSDLSLRAKEMLRIRSEVEEVLSRH
THHEISELRADMDRDKVFTAREAVAYGLADQVLSRRNAAV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=663610 OG708_RS32890 WP_327293891.1 7196494..7197096(+) (clpP) [Streptomyces sp. NBC_01180]
ATGAGCCAGTACACGATTCCCAACGTCGTCGAGCGCACCCCGCAGGGGGAGCGGTCCTACGACGTCTTCAGCAGGCTGCT
CTCCGAGCGGATCATCTTCATCGGCACCGAGATCGACGACGGCGTAGCCAACGTCGTCATCGCACAGCTGCTGCACCTCG
AGTCGTCGAGCCAGGAGACCGAGATCTCCATCTACATCAACTCACCCGGCGGTTCGGTCACTTCGCTGATGGCCATCTAC
GACACGATGACCTTCGTCAGCTCTCCCATCTCGACCTTCTGCGTCGGCCAGGCGGCATCGACCGCGGCGGTGCTGCTCGC
CGGCGGAGACCCCGGGCGGCGGTTCGTCCTCGACCACGCACGGGTCCTGCTCGGCCAGCCTGCGAGCGGCGGCGAGCAGG
GCACCGTCTCCGACCTCAGCCTGCGGGCGAAGGAGATGCTCCGTATCCGCTCGGAGGTCGAGGAGGTGCTCTCCCGGCAC
ACGCACCACGAAATCTCCGAACTGCGCGCCGACATGGACCGGGACAAGGTCTTCACCGCGCGCGAGGCCGTCGCGTACGG
GCTCGCCGACCAGGTGCTCAGCCGCCGGAACGCAGCCGTATAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.619

94.5

0.45
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

43.684

95

0.415
  clpP Streptococcus mutans UA159

40.212

94.5

0.38
  clpP Lactococcus lactis subsp. cremoris KW2

38.22

95.5

0.365
  clpP Streptococcus pyogenes MGAS315

38.624

94.5

0.365
  clpP Streptococcus pyogenes JRS4

38.624

94.5

0.365
  clpP Streptococcus pneumoniae Rx1

37.5

96

0.36
  clpP Streptococcus pneumoniae D39

37.5

96

0.36
  clpP Streptococcus pneumoniae R6

37.5

96

0.36
  clpP Streptococcus pneumoniae TIGR4

37.5

96

0.36
  clpP Streptococcus thermophilus LMG 18311

37.5

96

0.36
  clpP Streptococcus thermophilus LMD-9

37.5

96

0.36