Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   MNO09_RS04040 Genome accession   NZ_CP093325
Coordinates   364946..365527 (-) Length   193 a.a.
NCBI ID   WP_001049163.1    Uniprot ID   A0A366GQ86
Organism   Bacillus sp. N5-665     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 359946..370527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS04010 (MNO09_03960) - 360034..360840 (+) 807 WP_000455192.1 DUF368 domain-containing protein -
  MNO09_RS04015 (MNO09_03965) - 361069..361527 (+) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -
  MNO09_RS04020 (MNO09_03970) rapZ 361548..362429 (+) 882 WP_000138461.1 RNase adapter RapZ -
  MNO09_RS04025 (MNO09_03975) - 362433..363386 (+) 954 WP_000712179.1 YvcK family protein -
  MNO09_RS04030 (MNO09_03980) whiA 363476..364426 (+) 951 WP_000006568.1 DNA-binding protein WhiA -
  MNO09_RS04035 (MNO09_03985) - 364450..364698 (+) 249 WP_000250305.1 HPr family phosphocarrier protein -
  MNO09_RS04040 (MNO09_03990) clpP 364946..365527 (-) 582 WP_001049163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  MNO09_RS04045 (MNO09_03995) - 365769..366638 (-) 870 WP_000018937.1 DUF421 domain-containing protein -
  MNO09_RS04050 (MNO09_04000) - 366659..366865 (-) 207 WP_000215919.1 DUF1657 domain-containing protein -
  MNO09_RS04055 (MNO09_04005) spoVAE 366877..367227 (-) 351 WP_000575918.1 stage V sporulation protein AE -
  MNO09_RS04060 (MNO09_04010) spoVAD 367224..368240 (-) 1017 WP_000938954.1 stage V sporulation protein AD -
  MNO09_RS04065 (MNO09_04015) spoVAC 368241..368717 (-) 477 WP_000095399.1 stage V sporulation protein AC -
  MNO09_RS04070 (MNO09_04020) - 368747..369232 (-) 486 WP_001228534.1 YhcN/YlaJ family sporulation lipoprotein -
  MNO09_RS04075 (MNO09_04025) - 369326..369532 (-) 207 WP_000216166.1 DUF1657 domain-containing protein -
  MNO09_RS04080 (MNO09_04030) - 369738..370091 (+) 354 WP_000722241.1 YxeA family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21447.68 Da        Isoelectric Point: 5.0423

>NTDB_id=663593 MNO09_RS04040 WP_001049163.1 364946..365527(-) (clpP) [Bacillus sp. N5-665]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=663593 MNO09_RS04040 WP_001049163.1 364946..365527(-) (clpP) [Bacillus sp. N5-665]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAATAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAATTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCTGAAAGAGCTCTAGAATACGGCTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554