Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | AS19_RS13585 | Genome accession | NZ_AP014613 |
| Coordinates | 2988645..2989766 (+) | Length | 373 a.a. |
| NCBI ID | WP_011589942.1 | Uniprot ID | A0AAD1F0I1 |
| Organism | Alcanivorax sp. NBRC 101098 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2983645..2994766
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AS19_RS13565 (AS19_27250) | - | 2985126..2985674 (-) | 549 | WP_035459852.1 | YggT family protein | - |
| AS19_RS13570 (AS19_27260) | proC | 2985895..2986704 (-) | 810 | WP_011589939.1 | pyrroline-5-carboxylate reductase | - |
| AS19_RS13575 (AS19_27270) | - | 2986725..2987414 (-) | 690 | WP_041705640.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| AS19_RS13580 (AS19_27280) | pilT | 2987550..2988584 (+) | 1035 | WP_011589941.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AS19_RS13585 (AS19_27290) | pilU | 2988645..2989766 (+) | 1122 | WP_011589942.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| AS19_RS13590 (AS19_27300) | - | 2989930..2990136 (-) | 207 | WP_035460127.1 | SlyX family protein | - |
| AS19_RS13595 (AS19_27310) | - | 2990517..2991071 (+) | 555 | WP_041705170.1 | TMEM165/GDT1 family protein | - |
| AS19_RS13600 (AS19_27320) | - | 2991213..2991752 (+) | 540 | WP_011589945.1 | YaeQ family protein | - |
| AS19_RS13605 (AS19_27330) | - | 2991859..2992422 (+) | 564 | WP_011589946.1 | HdeD family acid-resistance protein | - |
| AS19_RS13610 (AS19_27340) | - | 2992462..2993646 (+) | 1185 | WP_046962220.1 | hypothetical protein | - |
| AS19_RS13615 (AS19_27350) | arsH | 2993736..2994446 (-) | 711 | WP_046962221.1 | arsenical resistance protein ArsH | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 41311.59 Da Isoelectric Point: 6.7783
>NTDB_id=66222 AS19_RS13585 WP_011589942.1 2988645..2989766(+) (pilU) [Alcanivorax sp. NBRC 101098]
MEFEELLKLMVQKGGSDLFITAGVPPSMKINGKILPVTKSALTPDITRDIVFGVMTEQQRKEFVANHECNFAISARGVGR
FRVSAFYQRNLVGMVLRRIETKIPNVDDLRLPPVIKELAMTKRGLVIFVGATGTGKSTSLASMIGHRNKNSKGHIITIED
PIEFIHQHQGCIVTQREVGIDTESFDVALKNTLRQAPDVILIGEIRTPDTMDKAIAFAETGHLCLATLHANNANQALDRI
IHFFPADRHGQLWMDLSLNLKGIVAQQLIPTPDGKGRRAAIEVLLGTPLVQDHIRKGEVHQIKQLMSKSREQGMQTFDQA
LYDLYSAGEITYEDAMLHADSPNDLRLMIKLGNETDASSLDVATRGLSIEDTE
MEFEELLKLMVQKGGSDLFITAGVPPSMKINGKILPVTKSALTPDITRDIVFGVMTEQQRKEFVANHECNFAISARGVGR
FRVSAFYQRNLVGMVLRRIETKIPNVDDLRLPPVIKELAMTKRGLVIFVGATGTGKSTSLASMIGHRNKNSKGHIITIED
PIEFIHQHQGCIVTQREVGIDTESFDVALKNTLRQAPDVILIGEIRTPDTMDKAIAFAETGHLCLATLHANNANQALDRI
IHFFPADRHGQLWMDLSLNLKGIVAQQLIPTPDGKGRRAAIEVLLGTPLVQDHIRKGEVHQIKQLMSKSREQGMQTFDQA
LYDLYSAGEITYEDAMLHADSPNDLRLMIKLGNETDASSLDVATRGLSIEDTE
Nucleotide
Download Length: 1122 bp
>NTDB_id=66222 AS19_RS13585 WP_011589942.1 2988645..2989766(+) (pilU) [Alcanivorax sp. NBRC 101098]
ATGGAATTCGAAGAGCTTCTCAAGTTGATGGTACAGAAAGGTGGGTCAGATCTGTTTATCACCGCTGGCGTACCCCCGAG
TATGAAAATCAACGGCAAGATCCTGCCGGTGACCAAAAGTGCGCTGACCCCGGATATAACACGGGACATCGTGTTTGGCG
TCATGACCGAGCAGCAGCGCAAGGAGTTCGTGGCCAACCATGAGTGTAACTTTGCCATCTCCGCCCGTGGCGTGGGCCGT
TTCCGGGTCTCTGCGTTCTATCAGCGCAACCTGGTGGGCATGGTACTGCGCCGCATCGAAACCAAAATCCCTAACGTGGA
CGACCTGCGCTTGCCGCCAGTGATAAAGGAACTGGCTATGACCAAGCGTGGCTTAGTGATTTTCGTGGGCGCTACCGGTA
CCGGTAAATCCACCTCACTGGCGTCCATGATTGGCCATCGCAACAAGAACTCCAAGGGTCACATCATCACCATTGAAGAC
CCCATCGAATTTATCCACCAGCACCAGGGCTGTATCGTCACCCAGCGTGAGGTGGGCATTGATACCGAATCCTTCGACGT
GGCCCTGAAGAACACCCTGCGCCAGGCACCGGATGTGATTCTGATTGGGGAGATCCGCACCCCTGACACCATGGACAAGG
CCATTGCTTTCGCCGAAACCGGGCACCTGTGTCTAGCTACCTTACACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATTCACTTCTTCCCGGCGGATCGTCATGGCCAGCTGTGGATGGATCTATCCCTGAACCTGAAAGGCATCGTCGCCCAGCA
ACTGATCCCCACCCCAGATGGTAAAGGCCGACGCGCGGCCATCGAAGTGCTTCTAGGCACACCGCTGGTACAAGACCATA
TCCGCAAGGGCGAAGTGCATCAGATCAAGCAGCTGATGAGCAAATCCCGGGAGCAGGGTATGCAGACTTTCGATCAAGCC
CTTTACGACCTGTACTCCGCCGGTGAAATCACCTACGAAGACGCCATGCTCCACGCCGACTCGCCCAACGACTTACGCCT
GATGATTAAGCTCGGCAACGAAACCGACGCCTCCAGTTTAGACGTGGCCACGCGGGGTCTAAGCATCGAGGATACGGAGT
AA
ATGGAATTCGAAGAGCTTCTCAAGTTGATGGTACAGAAAGGTGGGTCAGATCTGTTTATCACCGCTGGCGTACCCCCGAG
TATGAAAATCAACGGCAAGATCCTGCCGGTGACCAAAAGTGCGCTGACCCCGGATATAACACGGGACATCGTGTTTGGCG
TCATGACCGAGCAGCAGCGCAAGGAGTTCGTGGCCAACCATGAGTGTAACTTTGCCATCTCCGCCCGTGGCGTGGGCCGT
TTCCGGGTCTCTGCGTTCTATCAGCGCAACCTGGTGGGCATGGTACTGCGCCGCATCGAAACCAAAATCCCTAACGTGGA
CGACCTGCGCTTGCCGCCAGTGATAAAGGAACTGGCTATGACCAAGCGTGGCTTAGTGATTTTCGTGGGCGCTACCGGTA
CCGGTAAATCCACCTCACTGGCGTCCATGATTGGCCATCGCAACAAGAACTCCAAGGGTCACATCATCACCATTGAAGAC
CCCATCGAATTTATCCACCAGCACCAGGGCTGTATCGTCACCCAGCGTGAGGTGGGCATTGATACCGAATCCTTCGACGT
GGCCCTGAAGAACACCCTGCGCCAGGCACCGGATGTGATTCTGATTGGGGAGATCCGCACCCCTGACACCATGGACAAGG
CCATTGCTTTCGCCGAAACCGGGCACCTGTGTCTAGCTACCTTACACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATTCACTTCTTCCCGGCGGATCGTCATGGCCAGCTGTGGATGGATCTATCCCTGAACCTGAAAGGCATCGTCGCCCAGCA
ACTGATCCCCACCCCAGATGGTAAAGGCCGACGCGCGGCCATCGAAGTGCTTCTAGGCACACCGCTGGTACAAGACCATA
TCCGCAAGGGCGAAGTGCATCAGATCAAGCAGCTGATGAGCAAATCCCGGGAGCAGGGTATGCAGACTTTCGATCAAGCC
CTTTACGACCTGTACTCCGCCGGTGAAATCACCTACGAAGACGCCATGCTCCACGCCGACTCGCCCAACGACTTACGCCT
GATGATTAAGCTCGGCAACGAAACCGACGCCTCCAGTTTAGACGTGGCCACGCGGGGTCTAAGCATCGAGGATACGGAGT
AA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
78.919 |
99.196 |
0.783 |
| pilU | Acinetobacter baylyi ADP1 |
68.067 |
95.71 |
0.651 |
| pilU | Vibrio cholerae strain A1552 |
54.318 |
96.247 |
0.523 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.737 |
95.71 |
0.399 |
| pilT | Legionella pneumophila strain Lp02 |
40.299 |
89.812 |
0.362 |
| pilT | Legionella pneumophila strain ERS1305867 |
40.299 |
89.812 |
0.362 |