Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MKP10_RS02810 Genome accession   NZ_CP093164
Coordinates   595194..597284 (+) Length   696 a.a.
NCBI ID   WP_241530023.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain LQ01-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590194..602284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKP10_RS02790 (MKP10_02790) comM 592362..593426 (+) 1065 WP_045430802.1 pilus assembly protein PilM Machinery gene
  MKP10_RS02795 (MKP10_02795) pilN 593426..593998 (+) 573 WP_045430800.1 type 4a pilus biogenesis protein PilN -
  MKP10_RS02800 (MKP10_02800) pilO 593995..594618 (+) 624 WP_241530021.1 type 4a pilus biogenesis protein PilO -
  MKP10_RS02805 (MKP10_02805) pilP 594615..595142 (+) 528 WP_241530022.1 type 4a pilus biogenesis lipoprotein PilP -
  MKP10_RS02810 (MKP10_02810) pilQ 595194..597284 (+) 2091 WP_241530023.1 type IV pilus secretin PilQ Machinery gene
  MKP10_RS02815 (MKP10_02815) aroK 597293..597838 (+) 546 WP_241530024.1 shikimate kinase AroK -
  MKP10_RS02820 (MKP10_02820) aroB 597862..598953 (+) 1092 WP_127838319.1 3-dehydroquinate synthase -
  MKP10_RS02825 (MKP10_02825) - 598974..600467 (+) 1494 WP_241530025.1 AAA family ATPase -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 74734.34 Da        Isoelectric Point: 4.7326

>NTDB_id=662026 MKP10_RS02810 WP_241530023.1 595194..597284(+) (pilQ) [Stutzerimonas zhaodongensis strain LQ01-5]
MNSTLTRLGLSLLAAFISPALLAANLNSLDVASLPGDRVELKLAFDEPVPTPRGYTLDQPARIALDLPGVSSKLGSKNHE
LGVGNARSVTVVEAQGRTRLIVNLTSLVPYSTRVDGNNLFVVLGESASAPAAASAAPVVSTKPVTPNASLAIGKSISNID
FRRGDDGAGNVVITLSDPSISPSIEEQGGKIRVSFAKTQLPESLRVRLDVQDFATPVKFVDSSSKADGASIAIEPSGRYD
YLAYQTDDKLTISVKPLSEADAEQRKAEHFTYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPW
DQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELEAQRQIAELAPLRREVVQVNYAKASDIARLFQSVTDKGGDSE
DRGSIAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVKWGGNVNLNGNWSAYGRGAGL
KLEEGGDEGDTVESPFNLPFVDLGATGATSGIGLGFVSNNAILDLQLSAMEKTGNGEVVSQPKVVTADKETAKILKGSEV
PYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDEPDFSQAASTGGIPSIRKNEVNAKVLVTDGETIVIGG
VFSNTQSKSVDKVPFLGDLPFVGRVFRRDLVQDRKSELLVFITPRIMNNQAIQASR

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=662026 MKP10_RS02810 WP_241530023.1 595194..597284(+) (pilQ) [Stutzerimonas zhaodongensis strain LQ01-5]
ATGAATAGCACTCTCACTCGTCTCGGTTTGTCGTTGCTGGCAGCGTTCATTTCGCCTGCATTGCTGGCAGCAAATTTGAA
TTCACTTGATGTCGCATCGTTGCCCGGCGACCGCGTTGAGCTGAAGCTGGCTTTCGACGAACCGGTTCCCACTCCTCGTG
GCTATACGCTCGACCAGCCAGCCCGCATCGCTCTTGATCTGCCAGGCGTATCCAGCAAGCTGGGGTCGAAAAATCATGAG
CTGGGTGTCGGTAATGCGCGAAGCGTGACCGTGGTGGAGGCGCAGGGGCGTACCCGACTCATCGTGAATCTCACTTCTCT
GGTTCCGTACTCGACCCGTGTTGACGGCAACAACCTGTTCGTCGTGCTTGGCGAATCCGCTAGCGCCCCAGCTGCTGCTT
CAGCTGCTCCGGTGGTCTCGACGAAACCGGTCACACCGAACGCTTCGCTGGCTATTGGAAAATCCATCAGCAATATCGAT
TTTCGCCGTGGGGATGACGGGGCCGGCAACGTAGTCATCACCTTGTCTGACCCTTCGATCAGCCCAAGTATTGAAGAGCA
AGGCGGTAAAATTCGAGTTTCCTTCGCCAAGACGCAATTGCCGGAATCGCTGCGTGTTCGGCTGGATGTCCAAGACTTTG
CTACGCCAGTTAAATTTGTCGATTCAAGCAGCAAGGCAGATGGCGCCAGTATTGCTATCGAGCCCAGCGGTCGATACGAC
TACCTGGCGTACCAGACCGACGACAAGCTGACCATTAGCGTCAAGCCGCTCAGCGAGGCAGATGCCGAGCAACGCAAGGC
CGAACATTTCACCTATTCCGGTGAGAAGTTGTCGCTGAATTTCCAGGACATTGACGTTCGCTCTGTTCTGCAGCTAATTG
CGGATTTTACTGATCTGAATCTGGTGGCTAGCGATACCGTACAGGGCAATATCACTCTACGTTTGCAGAACGTACCCTGG
GATCAGGCGCTGGATCTCGTGCTGAAAACCAAAGGCCTCGACAAACGCCAGGTGGGGAATGTTCTGCTGGTGGCTCCGGC
AGACGAGATCGCCGCGAGGGAGCGGCAGGAGTTGGAGGCGCAGCGCCAGATCGCCGAACTCGCACCGCTGCGACGCGAGG
TGGTACAGGTGAACTACGCCAAGGCTTCAGACATCGCACGCTTATTCCAGTCGGTCACCGACAAAGGTGGCGACAGCGAG
GATCGTGGTTCGATTGCCGTTGACGACCGCACCAACAACATCATCGCCTACCAGACCCAGGAGCGTCTTGACGAACTGCG
CCGTATCGTGGCTCAGCTGGACATTCCGGTGCGTCAGGTGATGATCGAGGCCCGAATTGTTGAGGCTAACGTTGATTACG
ATAAGAGCCTAGGTGTTAAGTGGGGAGGGAACGTTAATCTCAACGGCAATTGGAGCGCCTATGGGCGCGGCGCAGGCTTG
AAGTTGGAAGAAGGAGGTGATGAAGGGGATACGGTTGAGAGTCCGTTTAATTTGCCATTCGTGGACCTGGGCGCCACCGG
CGCAACTTCTGGCATTGGTCTGGGTTTCGTAAGCAATAACGCCATCCTCGATTTGCAGCTCTCGGCTATGGAAAAGACCG
GCAACGGCGAGGTTGTCTCCCAGCCCAAGGTCGTCACGGCAGATAAGGAAACTGCCAAAATCCTAAAAGGGTCTGAAGTT
CCTTATCAGGAAGCAAGCTCCAGCGGCGCCACCAGCACGTCTTTCAAGGAGGCAGCGCTATCCTTGGAGGTCACGCCGCA
GATTACCCCTGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAGCCGGACTTCTCTCAAGCCGCTAGCACTG
GCGGTATCCCGTCAATTCGCAAGAATGAGGTCAATGCCAAGGTGTTGGTGACCGATGGGGAGACGATCGTCATTGGTGGG
GTGTTCTCCAATACTCAGAGCAAGTCGGTTGATAAGGTTCCGTTTCTAGGTGATTTGCCCTTCGTGGGTCGTGTATTTCG
CCGTGACCTCGTGCAGGACAGAAAGTCCGAGCTACTGGTATTCATTACTCCGCGGATCATGAATAATCAGGCAATTCAAG
CCAGTCGTTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-123)

Bacterial type II/III secretion system short domain (Secretin_N)

(373-439)

Secretin and TonB N terminus short domain (STN)

(300-346)

Bacterial type II and III secretion system protein (Secretin)

(529-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.296

100

0.757
  pilQ Acinetobacter baumannii strain A118

40.736

100

0.43
  pilQ Acinetobacter baumannii D1279779

40.736

100

0.43
  comQ Acinetobacter baylyi ADP1

42.63

99.425

0.424
  pilQ Legionella pneumophila strain ERS1305867

38.427

96.839

0.372
  pilQ Legionella pneumophila strain Lp02

38.427

96.839

0.372