Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   H7K47_RS00340 Genome accession   NZ_AP022107
Coordinates   72099..72767 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain WP5-S17-ESBL-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67099..77767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K47_RS00310 (WP5S17E11_00600) yicC 67118..67981 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  H7K47_RS00315 (WP5S17E11_00610) rph 68108..68824 (+) 717 WP_001247093.1 ribonuclease PH -
  H7K47_RS00320 (WP5S17E11_00620) pyrE 68890..69531 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  H7K47_RS00325 (WP5S17E11_00630) slmA 69568..70164 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  H7K47_RS00330 (WP5S17E11_00640) dut 70271..70729 (-) 459 WP_000976070.1 dUTP diphosphatase -
  H7K47_RS00335 (WP5S17E11_00650) coaBC 70707..71927 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  H7K47_RS00340 (WP5S17E11_00660) radC 72099..72767 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  H7K47_RS00345 (WP5S17E11_00670) rpmB 72984..73220 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  H7K47_RS00350 (WP5S17E11_00680) rpmG 73241..73408 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  H7K47_RS00355 (WP5S17E11_00690) mutM 73506..74315 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  H7K47_RS00360 (WP5S17E11_00700) coaD 74354..74833 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  H7K47_RS00365 (WP5S17E11_00710) waaA 74841..76118 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  H7K47_RS00370 (WP5S17E11_00720) rfaQ 76531..77589 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=66097 H7K47_RS00340 WP_001298959.1 72099..72767(+) (radC) [Escherichia coli strain WP5-S17-ESBL-11]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=66097 H7K47_RS00340 WP_001298959.1 72099..72767(+) (radC) [Escherichia coli strain WP5-S17-ESBL-11]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment