Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AVFI_RS04180 Genome accession   NZ_CP092712
Coordinates   870285..870587 (+) Length   100 a.a.
NCBI ID   WP_005418259.1    Uniprot ID   A0A1B9PKX0
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 865285..875587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS04170 (AVFI_04170) - 867764..868036 (+) 273 WP_005418257.1 HU family DNA-binding protein -
  AVFI_RS04175 (AVFI_04175) ppiD 868241..870097 (+) 1857 WP_017018475.1 peptidylprolyl isomerase -
  AVFI_RS04180 (AVFI_04180) comEA 870285..870587 (+) 303 WP_005418259.1 ComEA family DNA-binding protein Machinery gene
  AVFI_RS04185 (AVFI_04185) - 870738..872060 (+) 1323 WP_199414946.1 IS4 family transposase -
  AVFI_RS04190 (AVFI_04190) - 872144..873499 (-) 1356 WP_017018474.1 peptide MFS transporter -
  AVFI_RS04195 (AVFI_04195) rfaH 873882..874376 (+) 495 WP_065597783.1 transcription/translation regulatory transformer protein RfaH -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10857.60 Da        Isoelectric Point: 8.5689

>NTDB_id=659778 AVFI_RS04180 WP_005418259.1 870285..870587(+) (comEA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MKRILTLLSTLMLTLTLFSASVAAEVTKSDTHEGIEITVNINQAGAEELKTLLVGVGESKAQAIIDYRNANGKFVKADDL
TKVKGIGDKLVEKNRDRITL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=659778 AVFI_RS04180 WP_005418259.1 870285..870587(+) (comEA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGAAACGCATACTCACTTTACTTAGTACCTTGATGTTAACACTAACACTTTTCTCTGCTTCAGTAGCTGCAGAAGTAAC
AAAAAGCGATACACATGAAGGTATTGAAATAACGGTTAACATCAACCAAGCAGGAGCTGAAGAGCTAAAAACGTTATTGG
TTGGTGTTGGAGAATCAAAAGCTCAAGCGATAATTGATTACCGTAATGCTAACGGCAAGTTTGTCAAAGCTGATGATTTA
ACGAAAGTTAAAGGTATTGGGGATAAACTGGTTGAGAAAAACCGAGATAGAATCACATTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9PKX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

56

100

0.56
  comEA Vibrio parahaemolyticus RIMD 2210633

55

100

0.55
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

43.81

100

0.46
  comEA Acinetobacter baumannii strain A118

34.426

100

0.42
  comEA Acinetobacter baylyi ADP1

50

82

0.41