Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHU31_RS13710 Genome accession   NZ_CP108259
Coordinates   3029069..3029752 (-) Length   227 a.a.
NCBI ID   WP_030921266.1    Uniprot ID   A0ABV2UCE3
Organism   Streptomyces sp. NBC_00055     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3024069..3034752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU31_RS13700 (OHU31_13715) - 3026530..3027543 (+) 1014 WP_327423397.1 hypothetical protein -
  OHU31_RS13705 (OHU31_13720) clpX 3027613..3028911 (-) 1299 WP_030921263.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHU31_RS13710 (OHU31_13725) clpP 3029069..3029752 (-) 684 WP_030921266.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHU31_RS13715 (OHU31_13730) - 3029800..3030405 (-) 606 WP_018551584.1 ATP-dependent Clp protease proteolytic subunit -
  OHU31_RS13720 (OHU31_13735) tig 3030670..3032058 (-) 1389 WP_327423396.1 trigger factor -
  OHU31_RS13735 (OHU31_13750) - 3032589..3033728 (-) 1140 WP_405666191.1 tyrosine-type recombinase/integrase -
  OHU31_RS13740 (OHU31_13755) - 3033728..3033928 (-) 201 WP_326603719.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24826.26 Da        Isoelectric Point: 4.6814

>NTDB_id=657541 OHU31_RS13710 WP_030921266.1 3029069..3029752(-) (clpP) [Streptomyces sp. NBC_00055]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKIRDDIERDKILTAEDALAYGLVDQIVSTRKSAAGAMA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=657541 OHU31_RS13710 WP_030921266.1 3029069..3029752(-) (clpP) [Streptomyces sp. NBC_00055]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGTCTCTACACCGGCCCGCAGGTGGACAATCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCCCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACGC
CCGGCAAGCGCATGGCACTGCCCAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACGGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGTACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
GCTGGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCAGAGGACGCCCTCGCCTACGGGCTCGTCGACC
AGATCGTCTCCACCCGCAAGAGCGCGGCCGGAGCGATGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

83.7

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.26

0.401
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.141

0.374
  clpP Streptococcus pneumoniae R6

44.271

84.581

0.374
  clpP Streptococcus pneumoniae TIGR4

44.271

84.581

0.374
  clpP Streptococcus pneumoniae D39

44.271

84.581

0.374
  clpP Streptococcus pneumoniae Rx1

44.271

84.581

0.374
  clpP Streptococcus mutans UA159

44.737

83.7

0.374