Detailed information NTG0657333

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHU26_RS22115
• Genome accession: NZ_CP108249
• Coordinates: 4907977..4909263 (+)
• Length: 428 a.a.
• NCBI ID: WP_030159377.1
• Uniprot ID: A0A5J6JHR3
• Organism: Streptomyces sp. NBC_00069
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4902977..4914263

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHU26_RS22080	-	4903026..4903949 (+)	924	WP_405706683.1	tyrosine-type recombinase/integrase	-
OHU26_RS22085	-	4903846..4904193 (+)	348	WP_405706460.1	tyrosine-type recombinase/integrase	-
OHU26_RS22100 (OHU26_22050)	tig	4904721..4906124 (+)	1404	WP_266629262.1	trigger factor	-
OHU26_RS22105 (OHU26_22055)	clpP	4906448..4907065 (+)	618	WP_266629264.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU26_RS22110 (OHU26_22060)	clpP	4907152..4907823 (+)	672	WP_323179072.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU26_RS22115 (OHU26_22065)	clpX	4907977..4909263 (+)	1287	WP_030159377.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHU26_RS22120 (OHU26_22070)	-	4909377..4909589 (+)	213	WP_405702962.1	hypothetical protein	-
OHU26_RS22125 (OHU26_22075)	-	4909645..4910574 (-)	930	WP_266629271.1	hypothetical protein	-
OHU26_RS22130 (OHU26_22080)	-	4910703..4913324 (+)	2622	WP_266629273.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46925.81 Da
• Isoelectric Point: 4.7271

>NTDB_id=657333 OHU26_RS22115 WP_030159377.1 4907977..4909263(+) (clpX) [Streptomyces sp. NBC_00069]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPQEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=657333 OHU26_RS22115 WP_030159377.1 4907977..4909263(+) (clpX) [Streptomyces sp. NBC_00069]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCTCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCCCTCTCGGTGGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCGACGGGCTCGGGCAAGACGCTCCTCGCCCAGA
CGCTCGCGCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGAGCGGAGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTCGAGGGCACGACGGCCTCGGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTCGAGAAGATCATCGAGTCGCGTGCGGGCGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGTCTGCCCGTGATCACCTCGGTCCACAACCTGGACCGC
GAGGCGCTGCTGCAGATCCTGGTGGAGCCGCGGAACGCGCTGGTGAAGCAGTACCAGCGGCTGTTCGAACTCGACGGCGT
CGAGCTGGACTTCGAGCGCGAGGCGCTGGAGGCCATCGCGGACCAGGCGATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
TCGGACGTCGTCCGCTCGAACGTCAACCCGACGCTGGTCCCCCGCATCGTCCCGAAGGACCAGGGCCCGCAGGAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

3D structure

• AlphaFold DB: A0A5J6JHR3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.925	0.598
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.015	96.028	0.519