Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHU26_RS22750 Genome accession   NZ_CP108249
Coordinates   5050492..5052225 (-) Length   577 a.a.
NCBI ID   WP_405703063.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00069     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5045492..5057225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU26_RS22730 (OHU26_22675) - 5045711..5046649 (-) 939 WP_266629464.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OHU26_RS22735 (OHU26_22680) - 5046646..5047248 (-) 603 WP_405703057.1 hypothetical protein -
  OHU26_RS22740 (OHU26_22685) - 5047342..5048487 (+) 1146 WP_405703059.1 RNA polymerase sigma factor -
  OHU26_RS22745 (OHU26_22690) rcrQ 5048573..5050495 (-) 1923 WP_266629468.1 ABC transporter ATP-binding protein Regulator
  OHU26_RS22750 (OHU26_22695) rcrP 5050492..5052225 (-) 1734 WP_405703063.1 ABC transporter ATP-binding protein Regulator
  OHU26_RS22755 (OHU26_22700) - 5052384..5053838 (-) 1455 WP_266629472.1 FGGY family carbohydrate kinase -
  OHU26_RS22760 (OHU26_22705) - 5053923..5054225 (-) 303 WP_266629474.1 YtxH domain-containing protein -
  OHU26_RS22780 (OHU26_22725) - 5055058..5055756 (-) 699 WP_266629476.1 hypothetical protein -
  OHU26_RS22785 (OHU26_22730) - 5056077..5056625 (+) 549 WP_405703067.1 potassium channel family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62433.41 Da        Isoelectric Point: 5.1549

>NTDB_id=657335 OHU26_RS22750 WP_405703063.1 5050492..5052225(-) (rcrP) [Streptomyces sp. NBC_00069]
MLIRLLRTHLSPYRKPIALLVLLQLLQTSASLYLPTLNADIIDNGVVSGDTGYILRSGALMLGVSLVQLGCNVGAVYFGA
RTAAAVGRDIRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCIGGIAMALSLDVKLSGV
LLAVVPVLGLSVGAIVFRTRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRIDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTESSVVP
PVDPVRGLLTRGQLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGHVLVDGEDVR
RIEPELLAKTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWHALEVAQARDFVAELEGGLDAPVTQGGTNVSGGQRQRL
AIARTLVQSPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=657335 OHU26_RS22750 WP_405703063.1 5050492..5052225(-) (rcrP) [Streptomyces sp. NBC_00069]
GTGCTCATACGACTTCTGCGGACCCATCTGAGTCCGTACCGGAAACCGATCGCCCTCCTGGTCCTGCTGCAACTGCTGCA
GACCAGTGCGAGCCTCTACCTCCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAGCGGGGACACCGGCTACA
TCCTGCGCTCCGGCGCCCTGATGCTCGGCGTCTCCCTCGTCCAGCTCGGGTGCAACGTCGGCGCCGTCTACTTCGGCGCC
CGTACCGCGGCCGCCGTCGGCCGCGACATCCGTGCGTCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGGGAGCTCGG
ACAGTTCGGCGCGCCCTCGCTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTGGTGCTGATGACCTTCA
CGCTGATGGTCTCCGCGCCGATCATGTGCATCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTC
CTGCTGGCCGTGGTCCCCGTCCTCGGCCTGTCGGTCGGCGCGATCGTCTTCAGGACGCGGCCGCTGTTCCGGAAGATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTCCGCGACG
AGTACGAGAAGGATCGGTTCCGCGAGGCCAACGCGGACCTGACCGGGGTCTCCCTCGCGGCCGGCAAGCTGCTCGCCCTG
ATGTTCCCGACCGTGATCGTCGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCATCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGTGTCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCGTCGACCCGGTGCGGGGGCTCCTCACCCGCGGGCAACTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGCCTGGTGCCGCGGCTGTTCGACGCGACCGGCGGCCACGTGCTGGTCGACGGGGAGGACGTACGC
CGCATCGAGCCGGAGCTGCTGGCCAAGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTCTTCTCCGGAACCGTCGCCTC
CAACCTGCGGTACGGGCGTCCCGACGCCACCGACGAGGAGCTGTGGCACGCGCTCGAGGTGGCGCAGGCCAGGGACTTCG
TGGCCGAGCTGGAGGGCGGTCTGGACGCGCCCGTCACCCAGGGCGGAACGAACGTCTCCGGAGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACGCTGGTGCAGAGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGTGAGACCGAGGACGCGACGGTGGTCATCGTCGCGCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTGCTGGACGAGGGCCAGGTCGTCGGCGAGGGGCGCCACCACGAGCTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.506

98.267

0.388