Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MJO57_RS26520 Genome accession   NZ_CP092417
Coordinates   5925280..5926500 (+) Length   406 a.a.
NCBI ID   WP_252020053.1    Uniprot ID   -
Organism   Endozoicomonas sp. SCSIO W0465     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5920280..5931500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO57_RS26505 (MJO57_26400) - 5920847..5922208 (-) 1362 WP_252017318.1 ISNCY family transposase -
  MJO57_RS26510 (MJO57_26405) rsmA 5923445..5924245 (+) 801 WP_252020051.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  MJO57_RS26515 (MJO57_26410) - 5924312..5925115 (+) 804 WP_252020052.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  MJO57_RS26520 (MJO57_26415) pilC 5925280..5926500 (+) 1221 WP_252020053.1 type II secretion system F family protein Machinery gene
  MJO57_RS26525 (MJO57_26420) - 5926866..5928143 (+) 1278 WP_256491761.1 IS4 family transposase -
  MJO57_RS26530 (MJO57_26425) - 5928302..5929231 (+) 930 WP_252020054.1 hypothetical protein -
  MJO57_RS26535 (MJO57_26430) - 5929264..5929419 (-) 156 WP_252020055.1 hypothetical protein -
  MJO57_RS26540 (MJO57_26435) - 5929465..5930166 (+) 702 WP_252020057.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43519.12 Da        Isoelectric Point: 9.1146

>NTDB_id=657303 MJO57_RS26520 WP_252020053.1 5925280..5926500(+) (pilC) [Endozoicomonas sp. SCSIO W0465]
MAAKPTKIVTFVWQGKDKAGKKTKGEMQSSSAALVKAELRKQGILATKVAKKGPSLGLGGGGKIKPMDIALFTRQLATMM
RAGVPLLQAFDITAGGIEKESMRDLVGKIKNEVASGSTFADSLRHHPDYFDDLYCNLVASGEQSGALETLLDRIATYKEK
TEALKAKIKKAMNYPIAVVCIAIIVTVILLVKVVPQFEEVFQGFGAELPAFTQIVINISEIVQNYWHIVLGTLVIGGFLI
KRTLKTSKSARDSLDRLVLKLPIIGEILDKSAVARFGRTLSTTFAAGVPLVDALDSVAGAAGNVVYANAARKIKEDVSTG
QQLQFAMKSSGIFPAMAVQMVSIGEESGSLDEMLDKVATFYEEEVDNMVDGLTSLMEPIIMSVLGVLVGGLIVAMYLPIF
QLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=657303 MJO57_RS26520 WP_252020053.1 5925280..5926500(+) (pilC) [Endozoicomonas sp. SCSIO W0465]
ATGGCCGCAAAACCAACCAAAATAGTCACATTTGTCTGGCAGGGTAAAGATAAAGCCGGCAAAAAGACGAAAGGGGAAAT
GCAGAGTTCCAGTGCTGCGCTGGTCAAGGCTGAACTCAGAAAACAGGGTATCCTGGCGACCAAAGTTGCCAAAAAAGGCC
CTTCCCTCGGGCTTGGCGGCGGCGGCAAGATCAAGCCCATGGACATAGCCCTTTTCACCCGCCAGTTGGCAACCATGATG
AGGGCAGGGGTACCACTGCTTCAGGCCTTTGATATCACGGCCGGTGGTATTGAAAAAGAGAGCATGAGGGATCTGGTTGG
CAAGATCAAGAATGAAGTAGCCTCAGGCAGTACGTTTGCCGATTCCCTTAGACATCACCCGGATTATTTTGACGACCTGT
ACTGCAATCTCGTTGCCTCCGGTGAGCAGTCTGGAGCACTTGAGACACTGCTGGACCGAATCGCTACCTATAAAGAAAAA
ACCGAAGCCCTCAAGGCAAAAATCAAGAAAGCGATGAACTACCCAATTGCTGTAGTCTGTATTGCGATCATTGTTACCGT
CATTCTTCTGGTAAAGGTAGTACCTCAATTTGAAGAGGTTTTTCAGGGCTTTGGTGCTGAGCTCCCCGCGTTTACACAGA
TCGTCATCAACATATCAGAGATTGTCCAGAATTATTGGCACATCGTCCTGGGAACCTTGGTTATTGGCGGCTTCCTGATA
AAACGGACGCTGAAGACATCCAAATCAGCCAGAGACTCTCTGGATCGCCTGGTACTGAAACTGCCAATTATTGGTGAAAT
ACTGGATAAATCAGCCGTTGCCCGCTTTGGCCGGACCCTGTCAACAACCTTTGCTGCAGGGGTTCCTCTGGTGGATGCTC
TCGACTCAGTAGCCGGTGCTGCCGGTAATGTAGTTTATGCCAATGCTGCCAGGAAGATCAAAGAAGATGTATCTACCGGT
CAGCAACTACAGTTTGCCATGAAAAGTTCAGGGATATTCCCGGCTATGGCTGTACAGATGGTATCGATCGGTGAGGAATC
AGGCTCTCTGGATGAGATGCTTGATAAAGTCGCCACTTTCTATGAAGAAGAAGTGGATAATATGGTTGATGGCCTGACCA
GCCTTATGGAGCCCATCATCATGTCAGTGTTGGGTGTACTGGTTGGTGGCCTGATTGTTGCAATGTACTTGCCAATCTTC
CAGCTGGGCTCGGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(278-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

68.227

100

0.682
  pilC Acinetobacter baylyi ADP1

60.68

100

0.616
  pilC Acinetobacter baumannii D1279779

58.578

100

0.589
  pilC Legionella pneumophila strain ERS1305867

56.359

98.768

0.557
  pilG Neisseria meningitidis 44/76-A

46

98.522

0.453
  pilG Neisseria gonorrhoeae MS11

45.137

98.768

0.446
  pilC Vibrio cholerae strain A1552

43.609

98.276

0.429
  pilC Vibrio campbellii strain DS40M4

41.646

98.768

0.411