Detailed information NTG0655737

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HP572_RS13215
• Genome accession: NZ_CP092070
• Coordinates: 2927691..2928536 (-)
• Length: 281 a.a.
• NCBI ID: WP_240583449.1
• Uniprot ID: -
• Organism: Pectobacterium sp. PL64
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2922691..2933536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HP572_RS13190 (HP572_13190)	-	2922850..2923620 (-)	771	WP_240583446.1	ABC transporter ATP-binding protein	-
HP572_RS13195 (HP572_13195)	-	2923622..2924659 (-)	1038	WP_240583447.1	iron ABC transporter permease	-
HP572_RS13200 (HP572_13200)	-	2924656..2925720 (-)	1065	WP_174865158.1	ABC transporter substrate-binding protein	-
HP572_RS13205 (HP572_13205)	-	2926072..2927097 (+)	1026	WP_240583448.1	LLM class flavin-dependent oxidoreductase	-
HP572_RS13210 (HP572_13210)	ypdK	2927455..2927529 (+)	75	WP_099606229.1	membrane protein YpdK	-
HP572_RS13215 (HP572_13215)	pilD	2927691..2928536 (-)	846	WP_240583449.1	A24 family peptidase	Machinery gene
HP572_RS13220 (HP572_13220)	-	2928645..2929391 (-)	747	WP_240583450.1	type II secretion system protein N	-
HP572_RS13225 (HP572_13225)	gspM	2929381..2929875 (-)	495	WP_240583451.1	type II secretion system protein GspM	-
HP572_RS13230 (HP572_13230)	gspL	2929872..2931149 (-)	1278	WP_240583452.1	type II secretion system protein GspL	-
HP572_RS13235 (HP572_13235)	gspK	2931146..2932132 (-)	987	WP_240583453.1	type II secretion system minor pseudopilin GspK	-
HP572_RS13240 (HP572_13240)	gspJ	2932129..2932779 (-)	651	WP_205549986.1	type II secretion system minor pseudopilin GspJ	-
HP572_RS13245 (HP572_13245)	gspI	2932779..2933144 (-)	366	WP_240583454.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31367.33 Da
• Isoelectric Point: 6.4540

>NTDB_id=655737 HP572_RS13215 WP_240583449.1 2927691..2928536(-) (pilD) [Pectobacterium sp. PL64]
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGMTDSDPDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLTAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSETFVPLNDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEGTAKPLAFGPWLAMGGVFGVIMNGLNL

Nucleotide

• Length: 846 bp

>NTDB_id=655737 HP572_RS13215 WP_240583449.1 2927691..2928536(-) (pilD) [Pectobacterium sp. PL64]
GTGGACGATTTAAGGGAATTTGCACAGCTGTTTCCGGCGTGGTGGTTTGGTGCGCTGGGCGTGTTGGGATTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCATGACCGATTCCGATCCTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCGGTGAAGGATAACATCCCGCTATTCAGCTGGCTGTGGTTGCGTGGCCGCTCCCGCTGCTGTCATCAATCGGTATCTGT
ACAATATCCGCTAGTGGAAGTCATCACCATGCTGGCTTTTCTGACGGCTGGTTTACTCTGGCTGCCCGGTATGGCGCTGT
GGGGCGCGTTGATTCTGCTGTCCTTCCTGTTGGTGCTAACCGTGATTGATATCAAAACGCTGCTGCTGCCGGACGTGCTT
ACGTTGTCGCTTCTGTGGATAGGGCTGCTGTTTAATCTGTCGGAGACATTTGTGCCATTGAATGATGCCGTCGTCGGCGC
GATGGCCGGTTATTTATCCCTGTGGCTACTTTATTGGGTATTCAAATACGCAACGGGCAAAGAGGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCACTGGGTGCCTGGCTGGGTTGGCAGGCATTGCCGAATCTGGTTCTGGTGGCGGCGCTGAGC
GGGTTGGTTGTTACTCTCGTCTGGCGCGGATTGCGTAAAGAGGGTACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATGGGCGGCGTGTTTGGCGTGATAATGAACGGATTGAATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.923	96.441	0.491
pilD	Vibrio campbellii strain DS40M4	45.926	96.085	0.441
pilD	Neisseria gonorrhoeae MS11	47.126	92.883	0.438
pilD	Acinetobacter baumannii D1279779	42.125	97.153	0.409
pilD	Acinetobacter nosocomialis M2	41.758	97.153	0.406