Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L3V77_RS04495 Genome accession   NZ_CP091975
Coordinates   927373..927618 (+) Length   81 a.a.
NCBI ID   WP_275136692.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 922373..932618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS04485 (L3V77_04485) - 924841..925113 (+) 273 WP_195702609.1 HU family DNA-binding protein -
  L3V77_RS04490 (L3V77_04490) ppiD 925266..927131 (+) 1866 WP_275135913.1 peptidylprolyl isomerase -
  L3V77_RS04495 (L3V77_04495) comEA 927373..927618 (+) 246 WP_275136692.1 ComEA family DNA-binding protein Machinery gene
  L3V77_RS04500 (L3V77_04500) rrtA 927773..928333 (-) 561 WP_275135914.1 rhombosortase -
  L3V77_RS04505 (L3V77_04505) - 928337..928966 (+) 630 WP_275135915.1 tRNA-uridine aminocarboxypropyltransferase -
  L3V77_RS04510 (L3V77_04510) - 928974..930299 (-) 1326 WP_275135916.1 anti-phage deoxyguanosine triphosphatase -
  L3V77_RS04515 (L3V77_04515) xylA 930498..931817 (-) 1320 WP_275135917.1 xylose isomerase -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 8982.29 Da        Isoelectric Point: 4.7906

>NTDB_id=654785 L3V77_RS04495 WP_275136692.1 927373..927618(+) (comEA) [Vibrio sp. DW001]
MTEHVLPMAGDKYEGIEITVNINTGTIEELSTLLLGVGEKKAQLIIDYRDEHGPFQSAEDLMQVKGIGPSTIEKNSKRIR
L

Nucleotide


Download         Length: 246 bp        

>NTDB_id=654785 L3V77_RS04495 WP_275136692.1 927373..927618(+) (comEA) [Vibrio sp. DW001]
ATGACAGAACATGTATTACCTATGGCAGGCGACAAATATGAAGGTATCGAAATAACGGTCAATATCAATACTGGTACCAT
TGAAGAGCTGTCTACACTTTTACTCGGAGTTGGAGAAAAGAAAGCACAGCTGATTATTGATTACAGGGATGAGCATGGAC
CATTTCAATCGGCGGAAGATTTGATGCAAGTGAAAGGGATCGGACCTTCTACGATAGAGAAAAACAGCAAGAGAATAAGG
CTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(19-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

68.056

88.889

0.605
  comEA Vibrio campbellii strain DS40M4

63.889

88.889

0.568
  comEA Vibrio cholerae strain A1552

57.534

90.123

0.519
  comEA Vibrio cholerae C6706

57.534

90.123

0.519
  comEA Acinetobacter baylyi ADP1

53.846

80.247

0.432
  comE1/comEA Haemophilus influenzae Rd KW20

51.667

74.074

0.383
  comEA Bacillus subtilis subsp. subtilis str. 168

54.545

67.901

0.37