Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   OG729_RS28425 Genome accession   NZ_CP108120
Coordinates   6293832..6294206 (-) Length   124 a.a.
NCBI ID   WP_405808689.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00210     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 6288832..6299206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG729_RS28410 (OG729_28380) - 6289098..6291200 (-) 2103 WP_405808684.1 ATP-binding protein -
  OG729_RS28415 (OG729_28385) - 6291197..6292738 (-) 1542 WP_405808685.1 glycosyltransferase -
  OG729_RS28420 (OG729_28390) - 6292735..6293835 (-) 1101 WP_405808687.1 HEAT repeat domain-containing protein -
  OG729_RS28425 (OG729_28395) chiS 6293832..6294206 (-) 375 WP_405808689.1 response regulator transcription factor Regulator
  OG729_RS28430 (OG729_28400) - 6294206..6294595 (-) 390 WP_405808691.1 response regulator -
  OG729_RS28435 (OG729_28405) - 6294791..6295222 (-) 432 WP_360877161.1 VOC family protein -
  OG729_RS28440 (OG729_28410) - 6295291..6295812 (-) 522 WP_405808692.1 pyridoxamine 5'-phosphate oxidase family protein -
  OG729_RS28445 (OG729_28415) - 6296049..6299036 (+) 2988 WP_405808694.1 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13377.33 Da        Isoelectric Point: 4.4751

>NTDB_id=654205 OG729_RS28425 WP_405808689.1 6293832..6294206(-) (chiS) [Streptomyces sp. NBC_00210]
MARILIADDDVDIRDLVAFKLTQSGHEVIAVEDGMAALKAARSQPVDVALLDIRMPGMSGLDVCRELRAAPETESLPVIL
ITARSQEGDVETGFAAGADDYIIKPFSPRELSSRVQAVLTRATR

Nucleotide


Download         Length: 375 bp        

>NTDB_id=654205 OG729_RS28425 WP_405808689.1 6293832..6294206(-) (chiS) [Streptomyces sp. NBC_00210]
ATGGCTCGCATCCTCATTGCCGATGACGACGTCGACATACGGGACCTTGTCGCGTTCAAGCTGACCCAGAGCGGCCATGA
GGTCATCGCCGTGGAGGACGGTATGGCCGCACTCAAGGCAGCGCGCAGCCAGCCGGTGGATGTCGCCCTGCTCGACATAC
GCATGCCCGGAATGTCCGGTCTGGATGTGTGCCGCGAACTACGCGCGGCGCCCGAGACCGAGTCACTCCCCGTCATCCTG
ATCACGGCCCGCTCCCAGGAGGGAGACGTCGAGACGGGATTCGCCGCGGGAGCCGACGACTACATCATCAAGCCGTTCAG
TCCGCGCGAGCTGAGCAGCCGGGTCCAGGCCGTGCTCACCCGGGCCACGCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

44.068

95.161

0.419
  micA Streptococcus pneumoniae Cp1015

39.344

98.387

0.387
  vicR Streptococcus mutans UA159

39.344

98.387

0.387
  scnR Streptococcus mutans UA159

38.843

97.581

0.379
  ciaR Streptococcus pneumoniae Rx1

37.903

100

0.379
  ciaR Streptococcus pneumoniae D39

37.903

100

0.379
  ciaR Streptococcus pneumoniae R6

37.903

100

0.379
  ciaR Streptococcus pneumoniae TIGR4

37.903

100

0.379
  ciaR Streptococcus mutans UA159

36.29

100

0.363