Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5M76_RS01925 Genome accession   NZ_CP091833
Coordinates   440885..442156 (-) Length   423 a.a.
NCBI ID   WP_188871158.1    Uniprot ID   -
Organism   Shewanella xiamenensis strain HD6452     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435885..447156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5M76_RS01895 (K5M76_01895) - 436838..437374 (-) 537 WP_011070769.1 thioredoxin family protein -
  K5M76_RS01900 (K5M76_01900) mutT 437518..437913 (-) 396 WP_259476012.1 8-oxo-dGTP diphosphatase MutT -
  K5M76_RS01905 (K5M76_01905) yacG 438000..438209 (-) 210 WP_037413634.1 DNA gyrase inhibitor YacG -
  K5M76_RS01910 (K5M76_01910) zapD 438319..439053 (-) 735 WP_037413632.1 cell division protein ZapD -
  K5M76_RS01915 (K5M76_01915) coaE 439046..439663 (-) 618 WP_144375700.1 dephospho-CoA kinase -
  K5M76_RS01920 (K5M76_01920) pilD 439804..440730 (-) 927 WP_259476014.1 A24 family peptidase Machinery gene
  K5M76_RS01925 (K5M76_01925) pilC 440885..442156 (-) 1272 WP_188871158.1 type II secretion system F family protein Machinery gene
  K5M76_RS01930 (K5M76_01930) pilB 442276..443985 (-) 1710 WP_055648721.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5M76_RS01935 (K5M76_01935) - 444902..445732 (+) 831 WP_259476016.1 O-antigen ligase -
  K5M76_RS01940 (K5M76_01940) - 445776..446204 (-) 429 WP_310795048.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46047.38 Da        Isoelectric Point: 10.2770

>NTDB_id=653795 K5M76_RS01925 WP_188871158.1 440885..442156(-) (pilC) [Shewanella xiamenensis strain HD6452]
MATATTVKKPRPKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEVRSKLKSQGVNPKTVRKQSAALFKLGDAKIT
PMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEVILKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=653795 K5M76_RS01925 WP_188871158.1 440885..442156(-) (pilC) [Shewanella xiamenensis strain HD6452]
ATGGCTACGGCAACCACAGTAAAAAAGCCTCGCCCAAAAAAGATTGAGCAAAAAAGCCAACCTAAAATTTATACCTTTGA
ATGGAAAGGTGTTAACCGCGACGGCCAAAAAACCAGTGGCGAACTGAGGGGGGCCTCTGCTGCAGAGGTTCGTAGCAAGT
TAAAATCTCAAGGGGTAAATCCTAAAACCGTTCGCAAACAATCGGCCGCCTTATTTAAATTAGGCGATGCCAAAATTACC
CCTATGGATATTGCTATGGTGACTCGGCAAATTGCCACCATGCTTGCCGCTGGGGTGCCATTAGTGACTACCATTGAATT
ACTGGGTCGCGGCCATGAAAAAGCAAAAATGCGTGAGCTGTTAGCGACAATTCTATCGGAGATCCAGTCAGGTATTCCGT
TATCTGATGCTTTGCGTCCCCACCGACGTTACTTTGATGATCTTTATGTCGATTTAGTGGCGGCGGGTGAACATTCAGGC
TCACTCGATGTAGTGTTTGATCGTATTGCGACCTACCGTGAAAAATCTGAAGCATTAAAATCTAAGATTAAAAAAGCTAT
GTTTTATCCGGCAGCAGTAGTAATAGTCGCTATTTTAGTAACGGCACTATTATTACTGTTTGTGGTGCCACAATTTGAAG
ATATTTTTAAGGGCTTTGGCGCCGAGCTGCCTGCTTTTACCCAATTAGTGTTGCATATCTCCCGCGGCCTACAATCCTCT
TGGTATATCTTTTTGGGTGCCATAGTGGCTGGCGTATTTTTATTTGTGAGGGCTCATAGGAACTCGCAAATCGTGAGAGA
CAGAGTTGACGAAGTCATCTTAAAAATTCCAGCTATTGGTCCCATTCTACACAAAGGCGCTATGGCGCGTTTTGCCCGTA
CCTTAGCCACCACCTTTGCCGCTGGTGTCCCCTTAATCGACGGCTTAGAATCAGCCGCAGGGGCATCGGGCAATGCGGTA
TACCGTAAAGCCATCTTAAAAATCCGCCAGGAAGTGATGGCCGGGATGCAAATGAACGTGGCAATGCGAACCACAGGGCT
GTTCCCCGATATGCTGATCCAAATGGTGATGATTGGCGAAGAATCAGGCTCTCTTGATAATATGCTTAATAAAGTTTCAA
CTATCTATGAGATGCAAGTAGACGACGCTGTCGATGGTTTATCCAGCCTAATTGAACCTATCATGATGGTGGTCATTGGT
ACTGTTGTTGGTGGCCTTATTGTCGCTATGTATTTACCCATCTTCCAAATGGGTAAGGTGGTTGGTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

50.248

95.508

0.48
  pilC Acinetobacter baumannii D1279779

50.503

94.09

0.475
  pilC Acinetobacter baylyi ADP1

50.378

93.853

0.473
  pilC Vibrio cholerae strain A1552

48.622

94.326

0.459
  pilC Vibrio campbellii strain DS40M4

44.988

96.69

0.435
  pilG Neisseria meningitidis 44/76-A

41.791

95.035

0.397
  pilG Neisseria gonorrhoeae MS11

41.791

95.035

0.397