Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   L6W14_RS05215 Genome accession   NZ_CP091777
Coordinates   1125185..1126444 (+) Length   419 a.a.
NCBI ID   WP_131521863.1    Uniprot ID   -
Organism   Lysinibacillus sp. ACHW1.5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1120185..1131444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6W14_RS05185 (L6W14_05185) yfmH 1120264..1121565 (+) 1302 WP_131521866.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  L6W14_RS05190 (L6W14_05190) ymfI 1121562..1122290 (+) 729 WP_131521865.1 elongation factor P 5-aminopentanone reductase -
  L6W14_RS05195 (L6W14_05195) - 1122336..1122593 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  L6W14_RS05200 (L6W14_05200) - 1122810..1123595 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  L6W14_RS05205 (L6W14_05205) - 1123612..1124541 (+) 930 WP_193767401.1 RodZ family helix-turn-helix domain-containing protein -
  L6W14_RS05210 (L6W14_05210) pgsA 1124589..1125167 (+) 579 WP_004224936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L6W14_RS05215 (L6W14_05215) cinA 1125185..1126444 (+) 1260 WP_131521863.1 competence/damage-inducible protein A Machinery gene
  L6W14_RS05220 (L6W14_05220) recA 1126606..1127670 (+) 1065 WP_016992835.1 recombinase RecA Machinery gene
  L6W14_RS05225 (L6W14_05225) rny 1128186..1129745 (+) 1560 WP_004224930.1 ribonuclease Y -
  L6W14_RS05230 (L6W14_05230) - 1129975..1130703 (+) 729 WP_131521862.1 YveK family protein -
  L6W14_RS05235 (L6W14_05235) - 1130703..1131404 (+) 702 WP_131521861.1 CpsD/CapB family tyrosine-protein kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45205.56 Da        Isoelectric Point: 4.7154

>NTDB_id=653576 L6W14_RS05215 WP_131521863.1 1125185..1126444(+) (cinA) [Lysinibacillus sp. ACHW1.5]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQTILDAQTNPTVAPLASDGEVTLRVTAKAATEQQADQLIKAKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLGISQD
LIDTHGVVSAECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYAKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=653576 L6W14_RS05215 WP_131521863.1 1125185..1126444(+) (cinA) [Lysinibacillus sp. ACHW1.5]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
CCAGCTATCCGAGCTTGGCATCAACGTTTTTTATCATACCGTAGTAGGCGATAATGCAAAGCGTTTAGAACAAGCTATCG
AAGTGGCAGAGTCTCGTGCAGATCTCATTATTTTTTCGGGAGGACTTGGTCCGACAAAAGATGATTTAACGAAGGAAACG
ATTGCACGTCATCTTGGTGTTTCTCTTGAGTTTGATGAAGTAGCATTGACGTATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAGAATAATCGTAAACAGGCATTAATTTTAGCTGGGAGTGAGGTATTAGCTAATCACCATGGAATGG
CTCCAGGTATGATCTTCACAAAAAATGATCGCACTTATATTTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTTGCTGCGATGCTTAATGATGGAGGGATCATTGCATCACATGTTATGCGATTTTATGG
AATTGGTGAGGCCGAGCTTGAAGTACAAGTTCAAACTATTTTAGATGCACAAACCAATCCAACAGTTGCTCCACTTGCTT
CTGATGGTGAGGTAACGTTACGCGTAACAGCTAAAGCCGCAACAGAGCAACAAGCTGACCAGCTTATTAAGGCAAAGGTT
GCAGAAATACAAGCACTTGTTGGTGATTATCAATATGGTGTAGATGATGATTCCCTTGCCTCAAAAACGGTAGAAATGCT
ACTGGATAATGAGCTAACGATTGCGGCTGCTGAAAGTTTAACTGCTGGTTTATTTCAATCTGAACTTGCGGAAATTCCAG
GGGTAGGCAATGCACTTATAGGAGGCGTTGTTACCTATGCAGCAGATGCGAAAGTAAAACAGCTAGGCATTTCACAAGAT
TTAATTGATACACATGGTGTTGTGAGTGCTGAGTGTGCAGCGGCAATGGCAAGTGCTGTTCGTGAGAAATTTGCTACAAA
TATTGGGATTGGCCTTACAGGAGAAGCAGGTCCCACTGCGCATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CTATAAATGATGAGGAGCCGCTTACATATTTACTTCATTTATCAGGCATGCGAAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGTCATTATTTAATGCAGCTTTTAGAAGAACGTGGCTACGCAAAACGTTATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.329

0.511
  cinA Streptococcus mitis SK321

45.17

91.408

0.413
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408
  cinA Streptococcus mitis NCTC 12261

44.386

91.408

0.406
  cinA Streptococcus mutans UA159

44.063

90.453

0.399