Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L5471_RS13935 Genome accession   NZ_CP091523
Coordinates   2828223..2828693 (+) Length   156 a.a.
NCBI ID   WP_000934765.1    Uniprot ID   -
Organism   Staphylococcus aureus strain N12HSA28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2802700..2833769 2828223..2828693 within 0


Gene organization within MGE regions


Location: 2802700..2833769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L5471_RS13775 (L5471_13775) groES 2802700..2802984 (+) 285 WP_000917289.1 co-chaperone GroES -
  L5471_RS13780 (L5471_13780) groL 2803060..2804676 (+) 1617 WP_000240642.1 chaperonin GroEL -
  L5471_RS13785 (L5471_13785) - 2804771..2805317 (-) 547 Protein_2674 site-specific integrase -
  L5471_RS13790 (L5471_13790) - 2805378..2805590 (+) 213 WP_000128898.1 hypothetical protein -
  L5471_RS13795 (L5471_13795) - 2805587..2806177 (+) 591 WP_072419895.1 terminase small subunit -
  L5471_RS13800 (L5471_13800) - 2806494..2806931 (+) 438 WP_072419900.1 hypothetical protein -
  L5471_RS13805 (L5471_13805) - 2807037..2807480 (+) 444 WP_000022887.1 GNAT family N-acetyltransferase -
  L5471_RS13810 (L5471_13810) - 2808334..2809641 (-) 1308 WP_001045079.1 TrkH family potassium uptake protein -
  L5471_RS13815 (L5471_13815) - 2809802..2810713 (+) 912 WP_234719477.1 iron-hydroxamate ABC transporter substrate-binding protein -
  L5471_RS13820 (L5471_13820) - 2810775..2811620 (+) 846 WP_000812008.1 class I SAM-dependent methyltransferase -
  L5471_RS13825 (L5471_13825) - 2811992..2813215 (-) 1224 WP_072419894.1 ArgE/DapE family deacylase -
  L5471_RS13830 (L5471_13830) lukH 2813651..2814703 (+) 1053 WP_000791417.1 bi-component leukocidin LukGH subunit H -
  L5471_RS13835 (L5471_13835) lukG 2814725..2815741 (+) 1017 WP_000595401.1 bi-component leukocidin LukGH subunit G -
  L5471_RS13840 (L5471_13840) sph 2815979..2816809 (-) 831 Protein_2685 sphingomyelin phosphodiesterase -
  L5471_RS13845 (L5471_13845) - 2816860..2817897 (-) 1038 WP_000857182.1 site-specific integrase -
  L5471_RS13850 (L5471_13850) sek 2817981..2818709 (-) 729 WP_000733771.1 staphylococcal enterotoxin type K -
  L5471_RS13855 (L5471_13855) seq 2818733..2819461 (-) 729 WP_001033320.1 staphylococcal enterotoxin type Q -
  L5471_RS13860 (L5471_13860) - 2819657..2820427 (-) 771 WP_249452173.1 S24 family peptidase -
  L5471_RS13865 (L5471_13865) - 2820586..2820810 (+) 225 WP_000338186.1 DUF739 family protein -
  L5471_RS13870 (L5471_13870) - 2820828..2821088 (+) 261 WP_000435341.1 transcriptional regulator -
  L5471_RS13875 (L5471_13875) - 2821112..2821651 (-) 540 WP_000351243.1 hypothetical protein -
  L5471_RS13880 (L5471_13880) - 2821708..2822457 (+) 750 WP_001148337.1 phage antirepressor KilAC domain-containing protein -
  L5471_RS13885 (L5471_13885) - 2822473..2822670 (+) 198 WP_001148861.1 hypothetical protein -
  L5471_RS13890 (L5471_13890) - 2822701..2822841 (+) 141 WP_000939496.1 hypothetical protein -
  L5471_RS13895 (L5471_13895) - 2822856..2823488 (-) 633 WP_000275058.1 hypothetical protein -
  L5471_RS13900 (L5471_13900) - 2823547..2823867 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  L5471_RS13905 (L5471_13905) - 2823864..2824025 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  L5471_RS13910 (L5471_13910) - 2824118..2824378 (+) 261 WP_000291488.1 DUF1108 family protein -
  L5471_RS13915 (L5471_13915) - 2824387..2824650 (+) 264 WP_001205732.1 hypothetical protein -
  L5471_RS13920 (L5471_13920) - 2824647..2826602 (+) 1956 WP_047211354.1 AAA family ATPase -
  L5471_RS13925 (L5471_13925) - 2826604..2827524 (+) 921 WP_000138475.1 recombinase RecT -
  L5471_RS13930 (L5471_13930) - 2827605..2828222 (+) 618 WP_072353921.1 MBL fold metallo-hydrolase -
  L5471_RS13935 (L5471_13935) ssbA 2828223..2828693 (+) 471 WP_000934765.1 single-stranded DNA-binding protein Machinery gene
  L5471_RS13940 (L5471_13940) - 2828723..2829616 (+) 894 WP_000148328.1 DnaD domain-containing protein -
  L5471_RS13945 (L5471_13945) - 2829623..2829841 (+) 219 WP_000338527.1 hypothetical protein -
  L5471_RS13950 (L5471_13950) - 2829850..2830254 (+) 405 WP_000401978.1 RusA family crossover junction endodeoxyribonuclease -
  L5471_RS13955 (L5471_13955) - 2830267..2830518 (+) 252 Protein_2708 SA1788 family PVL leukocidin-associated protein -
  L5471_RS13960 (L5471_13960) - 2830503..2830598 (+) 96 Protein_2709 DUF1381 domain-containing protein -
  L5471_RS13965 (L5471_13965) - 2830595..2830744 (+) 150 WP_000595265.1 transcriptional activator RinB -
  L5471_RS13970 (L5471_13970) - 2830903..2831553 (+) 651 WP_001005262.1 hypothetical protein -
  L5471_RS13975 (L5471_13975) - 2831553..2831753 (+) 201 WP_001570807.1 DUF1514 family protein -
  L5471_RS13980 (L5471_13980) - 2831776..2832246 (+) 471 WP_000282755.1 hypothetical protein -
  L5471_RS13985 (L5471_13985) - 2832361..2832813 (+) 453 WP_000406191.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  L5471_RS13990 (L5471_13990) - 2832829..2833173 (+) 345 WP_000817289.1 HNH endonuclease -
  L5471_RS13995 (L5471_13995) - 2833302..2833769 (+) 468 WP_000919026.1 phage terminase small subunit P27 family -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17673.54 Da        Isoelectric Point: 4.9627

>NTDB_id=652122 L5471_RS13935 WP_000934765.1 2828223..2828693(+) (ssbA) [Staphylococcus aureus strain N12HSA28]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=652122 L5471_RS13935 WP_000934765.1 2828223..2828693(+) (ssbA) [Staphylococcus aureus strain N12HSA28]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Vibrio cholerae strain A1552

31.492

100

0.365
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365