Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   LVJ84_RS00725 Genome accession   NZ_CP091516
Coordinates   114873..116096 (-) Length   407 a.a.
NCBI ID   WP_115307878.1    Uniprot ID   A0A377R0X0
Organism   Kingella potus strain 3/SID/1128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109873..121096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS00690 (LVJ84_00690) hfq 110657..110917 (-) 261 WP_115307871.1 RNA chaperone Hfq -
  LVJ84_RS00695 (LVJ84_00695) greA 111050..111526 (-) 477 WP_115307872.1 transcription elongation factor GreA -
  LVJ84_RS00700 (LVJ84_00700) - 111714..112324 (-) 611 Protein_140 HI_0552 family protein -
  LVJ84_RS00705 (LVJ84_00705) yacG 112405..112590 (-) 186 WP_342345869.1 DNA gyrase inhibitor YacG -
  LVJ84_RS00710 (LVJ84_00710) zapD 112611..113372 (-) 762 WP_115307875.1 cell division protein ZapD -
  LVJ84_RS00715 (LVJ84_00715) coaE 113377..113988 (-) 612 WP_115307876.1 dephospho-CoA kinase -
  LVJ84_RS00720 (LVJ84_00720) pilD 113985..114866 (-) 882 WP_115307877.1 A24 family peptidase Machinery gene
  LVJ84_RS00725 (LVJ84_00725) pilG 114873..116096 (-) 1224 WP_115307878.1 type II secretion system F family protein Machinery gene
  LVJ84_RS00730 (LVJ84_00730) pilB 116121..117796 (-) 1676 Protein_146 type IV-A pilus assembly ATPase PilB -
  LVJ84_RS00735 (LVJ84_00735) - 117942..119500 (-) 1559 Protein_147 inorganic phosphate transporter -
  LVJ84_RS00740 (LVJ84_00740) - 119785..120657 (-) 873 WP_115308281.1 EamA family transporter -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44725.83 Da        Isoelectric Point: 10.1199

>NTDB_id=651951 LVJ84_RS00725 WP_115307878.1 114873..116096(-) (pilG) [Kingella potus strain 3/SID/1128]
MKNNRVNKEKGKRFTFEGKHTQSEQIVRGEVVAANEEDAQRKLLRRGIKPMRITKVKATRRKRITQEDITVFTRQLATMM
KAGLPLMQAFEIVARGHVNPSMTQLLMSVKSDVEQGQSMGSAFAKHPKYFDRFYCNLVAAGEAGGVLENLLDKLAVYKEK
TQSIKKKVKSALTYPIAIIVVAIVLVIVMMMFVLPAFGKVYKDMGAELPPLTQFMMTTSEFFVSYGWLIIIGLIGGVVAL
IHIHKTSPKFQKKVDAWLLKMPIFGAIVRKATIARWARTTASLFAAGVPLVEALDSVAGASGNILYEEATLNIKSQVNQG
LSLTSGMQSTGLFPNMVIQMAAIGEESGSLDDMLNKAAEFYEEEVDTAVNQLSALMEPIIMVVLGGIIGTILVAMYLPLF
NLGNVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=651951 LVJ84_RS00725 WP_115307878.1 114873..116096(-) (pilG) [Kingella potus strain 3/SID/1128]
ATGAAAAACAACCGAGTAAATAAAGAAAAAGGCAAACGTTTTACCTTTGAAGGCAAACACACCCAAAGCGAACAGATAGT
ACGCGGCGAAGTGGTTGCGGCCAATGAGGAAGATGCCCAAAGAAAACTATTGCGCAGAGGCATCAAACCGATGCGCATTA
CCAAAGTAAAGGCAACACGTAGAAAACGCATTACGCAGGAAGATATTACTGTCTTTACCCGCCAACTTGCTACCATGATG
AAAGCAGGTTTGCCGCTGATGCAGGCTTTTGAAATTGTAGCGCGCGGACACGTAAATCCGTCGATGACACAGTTACTGAT
GTCTGTCAAAAGTGATGTGGAACAAGGACAATCCATGGGTTCCGCTTTCGCCAAACACCCCAAATACTTTGATCGTTTTT
ACTGTAATTTGGTCGCAGCGGGCGAAGCAGGCGGCGTTTTGGAAAACCTTTTAGACAAACTCGCCGTTTATAAAGAGAAG
ACACAATCAATCAAGAAAAAAGTCAAATCAGCATTGACTTATCCTATTGCCATTATCGTAGTCGCCATCGTGCTGGTCAT
TGTAATGATGATGTTTGTACTGCCTGCCTTCGGTAAAGTTTATAAAGACATGGGGGCAGAACTTCCTCCTCTGACCCAGT
TTATGATGACTACATCCGAATTTTTCGTCAGCTATGGCTGGCTGATAATTATAGGCTTGATTGGTGGAGTAGTGGCTTTA
ATCCATATACATAAAACATCACCGAAATTCCAGAAGAAAGTGGATGCTTGGCTTTTGAAGATGCCTATTTTCGGTGCGAT
TGTCCGCAAAGCCACTATCGCGCGTTGGGCAAGAACTACTGCCAGCCTGTTTGCAGCCGGCGTACCCTTAGTGGAAGCCT
TGGACTCCGTAGCGGGCGCATCGGGCAACATCCTTTACGAAGAAGCTACACTCAATATCAAATCACAAGTCAATCAAGGC
TTATCTCTGACTTCCGGTATGCAGAGTACCGGCCTGTTCCCCAATATGGTTATCCAAATGGCTGCTATCGGAGAGGAATC
CGGTTCTTTGGACGATATGCTGAATAAAGCGGCAGAATTTTATGAAGAAGAAGTAGATACGGCGGTAAACCAACTGTCTG
CGCTGATGGAGCCCATCATCATGGTGGTGCTTGGCGGTATCATCGGTACCATATTGGTAGCCATGTACCTGCCGCTGTTC
AACCTGGGCAACGTAGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377R0X0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

68.844

97.789

0.673
  pilG Neisseria meningitidis 44/76-A

68.09

97.789

0.666
  pilC Legionella pneumophila strain ERS1305867

48.241

97.789

0.472
  pilC Pseudomonas stutzeri DSM 10701

46

98.28

0.452
  pilC Acinetobacter baumannii D1279779

45.477

97.789

0.445
  pilC Acinetobacter baylyi ADP1

45.113

98.034

0.442
  pilC Vibrio cholerae strain A1552

36.75

98.28

0.361