Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LVJ84_RS00720 Genome accession   NZ_CP091516
Coordinates   113985..114866 (-) Length   293 a.a.
NCBI ID   WP_115307877.1    Uniprot ID   A0A377R0L3
Organism   Kingella potus strain 3/SID/1128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108985..119866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS00690 (LVJ84_00690) hfq 110657..110917 (-) 261 WP_115307871.1 RNA chaperone Hfq -
  LVJ84_RS00695 (LVJ84_00695) greA 111050..111526 (-) 477 WP_115307872.1 transcription elongation factor GreA -
  LVJ84_RS00700 (LVJ84_00700) - 111714..112324 (-) 611 Protein_140 HI_0552 family protein -
  LVJ84_RS00705 (LVJ84_00705) yacG 112405..112590 (-) 186 WP_342345869.1 DNA gyrase inhibitor YacG -
  LVJ84_RS00710 (LVJ84_00710) zapD 112611..113372 (-) 762 WP_115307875.1 cell division protein ZapD -
  LVJ84_RS00715 (LVJ84_00715) coaE 113377..113988 (-) 612 WP_115307876.1 dephospho-CoA kinase -
  LVJ84_RS00720 (LVJ84_00720) pilD 113985..114866 (-) 882 WP_115307877.1 A24 family peptidase Machinery gene
  LVJ84_RS00725 (LVJ84_00725) pilG 114873..116096 (-) 1224 WP_115307878.1 type II secretion system F family protein Machinery gene
  LVJ84_RS00730 (LVJ84_00730) pilB 116121..117796 (-) 1676 Protein_146 type IV-A pilus assembly ATPase PilB -
  LVJ84_RS00735 (LVJ84_00735) - 117942..119500 (-) 1559 Protein_147 inorganic phosphate transporter -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32015.15 Da        Isoelectric Point: 8.8393

>NTDB_id=651950 LVJ84_RS00720 WP_115307877.1 113985..114866(-) (pilD) [Kingella potus strain 3/SID/1128]
MGDFYLRMAENYGSWVVHLSVIFGLLVGSFLNVVIYRLPVMMERGWTLFAKGHLGIEPTKEELQPFSLTKPASRCPKCGN
MVKPWQNIPVISYLLLKGQCGHCHTPISIRYPAIEILTACMFGIVAVRYGWSWLTLTGLVFTAILIALTFIDADTQYLPD
ELTLSLIWLGLLANCNGNGLISLQQSVIGAVCGYMSLRLLNALHKAVRGIDGMGGGDWKLLAALGAWLGAAALPVVVLAA
AIFGIVSALILRVRQKEPIAFGPCLAVAGWLIFIGYDKVSAGIRWWLRMSGFS

Nucleotide


Download         Length: 882 bp        

>NTDB_id=651950 LVJ84_RS00720 WP_115307877.1 113985..114866(-) (pilD) [Kingella potus strain 3/SID/1128]
ATGGGCGATTTTTATCTGCGTATGGCTGAGAATTACGGCTCATGGGTTGTCCATTTGTCCGTGATTTTCGGCCTGCTGGT
CGGCAGCTTTCTCAATGTTGTGATTTACCGCCTGCCCGTTATGATGGAGCGGGGATGGACTTTGTTCGCCAAAGGCCATC
TCGGCATTGAGCCGACAAAAGAAGAGCTGCAGCCGTTCAGCCTGACCAAGCCTGCTTCCCGTTGCCCGAAATGCGGAAAT
ATGGTTAAGCCATGGCAAAACATTCCCGTCATCAGCTATCTGCTGCTCAAAGGGCAATGCGGCCACTGCCACACGCCCAT
CAGCATACGCTACCCTGCTATCGAAATTCTTACCGCCTGCATGTTCGGAATCGTAGCCGTGCGTTACGGCTGGTCTTGGC
TGACCCTTACCGGTTTGGTGTTTACCGCCATCCTGATTGCACTGACCTTTATCGATGCCGACACGCAATACCTTCCCGAC
GAACTTACCCTGTCGCTGATATGGTTGGGGCTGCTGGCCAACTGTAACGGCAACGGCCTAATCAGCTTGCAGCAGTCCGT
AATCGGAGCCGTGTGCGGCTATATGAGCCTGCGGCTGCTGAACGCATTGCACAAAGCGGTACGCGGCATTGACGGCATGG
GTGGAGGAGACTGGAAGCTGTTGGCCGCGCTCGGTGCATGGTTGGGGGCTGCCGCATTGCCCGTTGTCGTTCTTGCCGCC
GCAATCTTCGGCATTGTTTCCGCACTTATATTGCGTGTCAGACAGAAAGAGCCGATTGCATTCGGCCCGTGTCTGGCTGT
TGCCGGATGGCTGATATTTATCGGTTACGACAAAGTTTCCGCCGGTATCCGCTGGTGGCTGCGCATGTCGGGTTTCTCAT
GA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(139-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377R0L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

59.041

92.491

0.546
  pilD Vibrio campbellii strain DS40M4

47.794

92.833

0.444
  pilD Vibrio cholerae strain A1552

47.388

91.468

0.433
  pilD Acinetobacter baumannii D1279779

44.484

95.904

0.427
  pilD Acinetobacter nosocomialis M2

44.128

95.904

0.423