Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT51_RS32560 Genome accession   NZ_CP108039
Coordinates   7310584..7311246 (-) Length   220 a.a.
NCBI ID   WP_328882483.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7305584..7316246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS32540 (OHT51_32590) - 7305934..7306803 (-) 870 WP_328882479.1 hypothetical protein -
  OHT51_RS32545 (OHT51_32595) - 7306800..7307369 (-) 570 WP_328882480.1 SigE family RNA polymerase sigma factor -
  OHT51_RS32550 (OHT51_32600) - 7307628..7309079 (+) 1452 WP_328882481.1 NCS2 family permease -
  OHT51_RS32555 (OHT51_32605) - 7309084..7310529 (-) 1446 WP_328882482.1 penicillin-binding transpeptidase domain-containing protein -
  OHT51_RS32560 (OHT51_32610) vraR 7310584..7311246 (-) 663 WP_328882483.1 response regulator transcription factor Regulator
  OHT51_RS32565 (OHT51_32615) - 7311243..7312532 (-) 1290 WP_328882484.1 histidine kinase -
  OHT51_RS32570 (OHT51_32620) - 7312529..7313530 (-) 1002 WP_328882485.1 hypothetical protein -
  OHT51_RS32575 (OHT51_32625) - 7313611..7314081 (-) 471 WP_328882486.1 GNAT family N-acetyltransferase -
  OHT51_RS32580 (OHT51_32630) - 7314086..7314859 (-) 774 WP_328882487.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23833.43 Da        Isoelectric Point: 6.7404

>NTDB_id=651950 OHT51_RS32560 WP_328882483.1 7310584..7311246(-) (vraR) [Streptomyces sp. NBC_00299]
MTPRPAIRVVLADDERMVRSALRAILSAEPDLEVVGEAATGAEAVSVVRDRRPDVVLMDVRMPEIDGIRATEQILATLDE
PPRIVVVTTFENDSYVYDALRAGAAGFLLKRADADALVQAVRLVSHSDTLLFPSAVRTLAAEHARAYPAPPAWVARLTGR
EREVLRLMAQGLTNAEIARRMEVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGFMNAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=651950 OHT51_RS32560 WP_328882483.1 7310584..7311246(-) (vraR) [Streptomyces sp. NBC_00299]
ATGACGCCCCGCCCCGCGATCCGCGTCGTCCTCGCCGACGACGAGCGCATGGTCCGCAGCGCCCTGCGCGCCATCCTCTC
CGCCGAGCCGGACCTGGAGGTGGTCGGCGAGGCGGCGACCGGTGCCGAGGCCGTGAGCGTCGTACGGGACCGGAGACCCG
ACGTCGTGCTCATGGACGTACGCATGCCCGAGATCGACGGCATCCGGGCCACCGAGCAGATCCTCGCCACCCTCGACGAA
CCGCCCCGTATCGTCGTCGTCACCACCTTCGAGAACGACTCCTACGTGTACGACGCCCTGCGCGCGGGAGCCGCCGGGTT
CCTGCTGAAGCGGGCGGACGCCGACGCGCTCGTGCAGGCCGTACGGCTGGTGTCGCACTCCGACACCCTGCTGTTCCCGT
CGGCCGTGCGCACCCTCGCGGCCGAGCACGCGCGCGCGTACCCCGCACCGCCGGCCTGGGTGGCAAGGCTCACAGGCCGC
GAGCGCGAGGTGCTGCGGCTGATGGCGCAGGGCCTGACCAACGCGGAGATCGCACGGCGGATGGAGGTCGGCCCGGCCAC
CGTGAAGTCGCATGTGGCGGCGGTGCTGGCGAAGACCGGCACCCGGGACCGGACGCAGGCCGTGATCGCCGCGTACGAGG
CGGGCTTCATGAACGCTCGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-210)

Response regulator receiver domain (Response_reg)

(9-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.209

97.727

0.364
  degU Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.364