Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   OG905_RS29320 Genome accession   NZ_CP108019
Coordinates   6423261..6423635 (-) Length   124 a.a.
NCBI ID   WP_266477124.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00322     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 6418261..6428635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG905_RS29305 (OG905_29335) - 6418527..6420629 (-) 2103 WP_328678575.1 ATP-binding protein -
  OG905_RS29310 (OG905_29340) - 6420626..6422167 (-) 1542 WP_328678576.1 glycosyltransferase -
  OG905_RS29315 (OG905_29345) - 6422164..6423264 (-) 1101 WP_328678577.1 HEAT repeat domain-containing protein -
  OG905_RS29320 (OG905_29350) chiS 6423261..6423635 (-) 375 WP_266477124.1 response regulator Regulator
  OG905_RS29325 (OG905_29355) - 6423635..6424024 (-) 390 WP_328678578.1 response regulator -
  OG905_RS29330 (OG905_29360) - 6424292..6424723 (-) 432 WP_328682666.1 VOC family protein -
  OG905_RS29335 (OG905_29365) - 6424764..6425276 (-) 513 WP_328678579.1 pyridoxamine 5'-phosphate oxidase family protein -
  OG905_RS29340 (OG905_29370) - 6425457..6428471 (+) 3015 WP_328678580.1 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13275.20 Da        Isoelectric Point: 4.5657

>NTDB_id=651537 OG905_RS29320 WP_266477124.1 6423261..6423635(-) (chiS) [Streptomyces sp. NBC_00322]
MPRVLIADDDGDIRDLVAFKLTQSGHEVIAVEDGMAALKAARSQPVDVALLDIRMPGMSGLDVCRELRAAPETASLPVIL
ITARSQEGDVETGFAAGADDYIIKPFSPRELSSRVQAVLTRASR

Nucleotide


Download         Length: 375 bp        

>NTDB_id=651537 OG905_RS29320 WP_266477124.1 6423261..6423635(-) (chiS) [Streptomyces sp. NBC_00322]
ATGCCTCGAGTCCTCATAGCCGATGACGATGGCGACATACGGGACCTTGTCGCTTTCAAACTGACCCAGAGCGGTCATGA
GGTCATCGCCGTGGAGGACGGCATGGCCGCGCTCAAGGCAGCGCGCAGCCAGCCGGTCGATGTCGCTCTGCTCGACATAC
GCATGCCCGGGATGTCCGGCCTGGATGTGTGCCGCGAACTCCGCGCGGCGCCCGAGACCGCCTCGCTCCCCGTCATCCTG
ATCACCGCCCGCTCCCAGGAGGGAGACGTCGAGACGGGATTCGCCGCGGGAGCCGACGACTACATCATCAAGCCGTTCAG
CCCGCGCGAACTGAGCAGCCGGGTCCAGGCCGTGCTCACCAGGGCCTCCCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

44.167

96.774

0.427
  vicR Streptococcus mutans UA159

37.903

100

0.379
  micA Streptococcus pneumoniae Cp1015

38.211

99.194

0.379
  scnR Streptococcus mutans UA159

38.017

97.581

0.371
  ciaR Streptococcus pneumoniae Rx1

37.097

100

0.371
  ciaR Streptococcus pneumoniae D39

37.097

100

0.371
  ciaR Streptococcus pneumoniae R6

37.097

100

0.371
  ciaR Streptococcus pneumoniae TIGR4

37.097

100

0.371
  ciaR Streptococcus mutans UA159

36.29

100

0.363