Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA37_RS07165 Genome accession   NZ_CP108006
Coordinates   1578337..1578972 (+) Length   211 a.a.
NCBI ID   WP_250740518.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1573337..1583972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS07145 (OHA37_07140) - 1574329..1575132 (+) 804 WP_266903496.1 IclR family transcriptional regulator -
  OHA37_RS07150 (OHA37_07145) - 1575199..1575891 (-) 693 WP_266903497.1 ABC transporter ATP-binding protein -
  OHA37_RS07155 (OHA37_07150) - 1575888..1576976 (-) 1089 WP_266903498.1 ABC transporter permease -
  OHA37_RS07160 (OHA37_07155) - 1577111..1578340 (+) 1230 WP_266903499.1 sensor histidine kinase -
  OHA37_RS07165 (OHA37_07160) vraR 1578337..1578972 (+) 636 WP_250740518.1 response regulator transcription factor Regulator
  OHA37_RS07170 (OHA37_07165) - 1579199..1580692 (-) 1494 WP_266903500.1 PLP-dependent aminotransferase family protein -
  OHA37_RS07175 (OHA37_07170) - 1580910..1581569 (+) 660 WP_266903501.1 nucleotidyltransferase family protein -
  OHA37_RS07180 (OHA37_07175) aceB 1581831..1583450 (+) 1620 WP_266903502.1 malate synthase A -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22012.30 Da        Isoelectric Point: 5.6627

>NTDB_id=651219 OHA37_RS07165 WP_250740518.1 1578337..1578972(+) (vraR) [Streptomyces sp. NBC_00335]
MTIRLLLADDHPVVRAGLRAVLDTEPDFEVVAEAATAERAVELARSAGVDVVLMDLQFGPGGGMHGSAATALITAGSPSP
RVLVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVA
DGLSNQQISKQLFLSQATVKSHLVHIYAKLGVDSRTSAVAAAATRRLIRTP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=651219 OHA37_RS07165 WP_250740518.1 1578337..1578972(+) (vraR) [Streptomyces sp. NBC_00335]
ATGACGATCCGGCTGCTCCTCGCCGACGACCACCCGGTGGTCCGGGCCGGGCTGCGCGCGGTACTGGACACGGAGCCGGA
CTTCGAGGTGGTGGCGGAGGCGGCGACGGCGGAACGCGCGGTGGAGCTGGCCCGCTCCGCCGGGGTCGACGTGGTCCTGA
TGGACCTCCAGTTCGGCCCCGGCGGCGGCATGCACGGCTCGGCGGCCACGGCCCTGATCACGGCCGGGTCCCCGTCCCCC
CGGGTGCTGGTCCTGACCACGTACGACACGGACGCGGACATCCTGGCGGCGGTGGAGGCGGGCGCCTCGGGCTACCTCCT
CAAAGACGCCCCGCCGGAGGAACTGGCGGCGGCGGTCCGCACCGCGGCGGCCGGCCAGTCCGCGCTGGCCCCGGCGGTGG
CGCTGCGCCTGATGGACCGCATGCGGACCCCGGCGGAGGCCCTGACCAAGCGGGAACTGGAGGTCCTCCAACTGGTCGCA
GACGGCCTGTCGAACCAGCAGATCTCCAAACAGCTCTTCCTCAGCCAGGCCACCGTCAAATCCCACCTGGTCCACATCTA
CGCAAAACTGGGCGTCGACTCCCGCACCTCGGCAGTAGCCGCGGCGGCCACCCGCCGCCTGATCCGCACGCCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-119)

Bacterial regulatory proteins, luxR family (GerE)

(147-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.679

100

0.389
  degU Bacillus subtilis subsp. subtilis str. 168

35

100

0.365