Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   OG842_RS26365 Genome accession   NZ_CP107960
Coordinates   5869575..5870006 (+) Length   143 a.a.
NCBI ID   WP_323185787.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00376     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5864575..5875006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG842_RS26355 (OG842_26345) - 5867005..5867805 (+) 801 WP_266733095.1 hypothetical protein -
  OG842_RS26360 (OG842_26350) - 5867914..5868759 (+) 846 WP_266733096.1 DegV family protein -
  OG842_RS26365 comEA/celA/cilE 5869575..5870006 (+) 432 WP_323185787.1 ComEA family DNA-binding protein Machinery gene
  OG842_RS26370 (OG842_26360) - 5870003..5872636 (+) 2634 WP_266733099.1 ComEC/Rec2 family competence protein -
  OG842_RS26375 (OG842_26365) - 5872846..5873730 (+) 885 WP_266733101.1 YceI family protein -
  OG842_RS26380 (OG842_26370) - 5873840..5874301 (-) 462 WP_266733103.1 DUF5959 family protein -
  OG842_RS26385 (OG842_26375) - 5874382..5874636 (-) 255 WP_266733105.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 14276.02 Da        Isoelectric Point: 8.7911

>NTDB_id=650265 OG842_RS26365 WP_323185787.1 5869575..5870006(+) (comEA/celA/cilE) [Streptomyces sp. NBC_00376]
MSGKVRRPGIRQLPSGSRVADALRAAGGVRAGADLTGLNRARVLMDGEQIVVGAPSGTSTEGGAGGVALGSSGGGGSAAA
GPVSLNTATVEQLDTLPGVGPVLAQHIVDYRAQHGGFRSIDELREVNGIGDRRFADLQPLVGP

Nucleotide


Download         Length: 432 bp        

>NTDB_id=650265 OG842_RS26365 WP_323185787.1 5869575..5870006(+) (comEA/celA/cilE) [Streptomyces sp. NBC_00376]
GTGAGCGGAAAGGTACGAAGGCCCGGGATCCGGCAACTGCCCTCCGGCTCAAGGGTGGCCGATGCGCTACGTGCGGCCGG
CGGAGTCCGGGCCGGAGCAGACCTCACCGGGCTCAACCGCGCGCGGGTGCTCATGGACGGCGAGCAGATCGTGGTGGGCG
CCCCGTCCGGTACTTCAACTGAGGGTGGGGCGGGAGGAGTCGCGCTGGGCAGCAGCGGCGGCGGCGGGAGTGCTGCGGCC
GGCCCGGTCAGCCTCAACACCGCGACCGTCGAACAACTGGACACGTTGCCCGGCGTCGGCCCGGTTCTCGCCCAGCACAT
CGTCGACTACCGCGCACAGCACGGCGGTTTCCGGTCCATCGATGAACTGCGTGAGGTCAACGGGATCGGTGACCGCCGGT
TCGCCGACCTCCAACCACTGGTGGGGCCATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(80-140)

SLBB domain (SLBB)

(2-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

38.298

98.601

0.378
  comEA/celA/cilE Streptococcus pneumoniae R6

37.241

100

0.378
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

37.241

100

0.378
  comEA/celA/cilE Streptococcus pneumoniae Rx1

37.241

100

0.378
  comEA/celA/cilE Streptococcus pneumoniae D39

37.241

100

0.378
  comEA Streptococcus thermophilus LMD-9

39.259

94.406

0.371
  comEA Bacillus subtilis subsp. subtilis str. 168

36.879

98.601

0.364
  comEA/celA/cilE Streptococcus mitis SK321

36.879

98.601

0.364