Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   SCAZ3_RS07510 Genome accession   NZ_AIDX01000001
Coordinates   1557459..1558169 (+) Length   236 a.a.
NCBI ID   WP_003047198.1    Uniprot ID   A0AAV3FQU3
Organism   Streptococcus canis FSL Z3-227     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552459..1563169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS07480 (SCAZ3_02955) dhaK 1552739..1553728 (+) 990 WP_003047183.1 dihydroxyacetone kinase subunit DhaK -
  SCAZ3_RS07485 (SCAZ3_02960) dhaL 1553739..1554314 (+) 576 WP_003047186.1 dihydroxyacetone kinase subunit DhaL -
  SCAZ3_RS07490 (SCAZ3_02965) dhaM 1554314..1554688 (+) 375 WP_003047188.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  SCAZ3_RS07495 (SCAZ3_02970) - 1554702..1555412 (+) 711 WP_003047191.1 MIP/aquaporin family protein -
  SCAZ3_RS12010 (SCAZ3_02980) - 1555808..1556077 (+) 270 WP_003047194.1 hypothetical protein -
  SCAZ3_RS07505 (SCAZ3_02985) - 1556286..1557281 (+) 996 WP_003047196.1 DUF3114 domain-containing protein -
  SCAZ3_RS07510 (SCAZ3_02990) vicR 1557459..1558169 (+) 711 WP_003047198.1 response regulator YycF Regulator
  SCAZ3_RS07515 (SCAZ3_02995) vicK 1558162..1559514 (+) 1353 WP_003047200.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SCAZ3_RS07520 (SCAZ3_03000) vicX 1559518..1560327 (+) 810 WP_003047202.1 MBL fold metallo-hydrolase Regulator
  SCAZ3_RS07525 (SCAZ3_03005) rnc 1560429..1561121 (+) 693 WP_003047203.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27057.91 Da        Isoelectric Point: 4.9038

>NTDB_id=64796 SCAZ3_RS07510 WP_003047198.1 1557459..1558169(+) (vicR) [Streptococcus canis FSL Z3-227]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=64796 SCAZ3_RS07510 WP_003047198.1 1557459..1558169(+) (vicR) [Streptococcus canis FSL Z3-227]
ATGAAAAAAATACTGATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAACTTGACAAAAGAAGGTTATGA
CATTGTGACCGCTTTTGATGGCCGCGAAGCGGTTACTGTTTTTGAAGAAGAAAAGCCAGATCTCATTATTCTTGATTTGA
TGCTGCCCGAACTTGATGGACTTGAAGTAGCCAAAGAAATTCGTAAAACTAGCCATATCCCTATTATCATGCTGTCTGCT
AAAGACAGTGAGTTTGACAAGGTTATTGGTCTTGAAATTGGAGCAGATGATTATGTGACGAAACCCTTCTCCAACCGTGA
ATTGTTGGCGCGTGTCAAAGCTCATTTACGTCGAACAGAGACCATTGAAACAGCCGTAGCAGAGGAAAATGCTTCTTCTG
GTTCGCAAGAATTGACCATTGGTAATTTGCAAATTTTACCCGATGCTTTTGTGGCCAAAAAACATGGTCAAGAGGTGGAA
TTAACCCATCGTGAATTTGAATTATTACATCATCTAGCCAATCACATGGGGCAAGTAATGACACGTGAGCATCTACTTGA
AACGGTTTGGGGCTATGATTACTTTGGCGATGTCCGTACTGTTGATGTGACTGTTCGCCGCTTACGTGAAAAAATTGAAG
ACACACCAAGCCGTCCCGAATATATTTTGACGAGACGTGGTGTTGGGTATTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.06

99.153

0.784
  covR Streptococcus salivarius strain HSISS4

44.828

98.305

0.441
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

38.136

100

0.381

Multiple sequence alignment