Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L1879_RS07025 Genome accession   NZ_CP091131
Coordinates   1458578..1459078 (+) Length   166 a.a.
NCBI ID   WP_017554535.1    Uniprot ID   A0A150KHY2
Organism   Heyndrickxia coagulans strain TM3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1453578..1464078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS07000 ribD 1454537..1455649 (+) 1113 WP_258922152.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  L1879_RS07005 - 1455630..1456277 (+) 648 WP_258922153.1 riboflavin synthase -
  L1879_RS07010 - 1456295..1457488 (+) 1194 WP_017554602.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  L1879_RS07015 ribE 1457501..1457971 (+) 471 WP_013860886.1 6,7-dimethyl-8-ribityllumazine synthase -
  L1879_RS07020 rpsF 1458229..1458516 (+) 288 WP_013860885.1 30S ribosomal protein S6 -
  L1879_RS07025 ssbA 1458578..1459078 (+) 501 WP_017554535.1 single-stranded DNA-binding protein Machinery gene
  L1879_RS07030 rpsR 1459123..1459362 (+) 240 WP_013860883.1 30S ribosomal protein S18 -
  L1879_RS07035 - 1459514..1460461 (+) 948 WP_202622404.1 YybS family protein -
  L1879_RS07040 - 1460497..1462470 (+) 1974 WP_258922154.1 DHH family phosphoesterase -
  L1879_RS07045 rplI 1462467..1462910 (+) 444 WP_017550659.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18713.39 Da        Isoelectric Point: 4.6529

>NTDB_id=647937 L1879_RS07025 WP_017554535.1 1458578..1459078(+) (ssbA) [Heyndrickxia coagulans strain TM3]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
NYEAQDGRRVYVTEVVAESVQFLEPRSANQERSSSQNYGNNQGNAFPGYNQDQNQNQRNQSYSKPDEDPFSNDGQPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=647937 L1879_RS07025 WP_017554535.1 1458578..1459078(+) (ssbA) [Heyndrickxia coagulans strain TM3]
ATGTTGAACCGTGTTGTTCTCGTAGGCAGGCTGACAAAAGATCCCGATTTGCGCTATACGCCGAGCGGAGTAGCGGTTGC
TACTTTTACTTTGGCTGTAAACCGTACGTTTACCAACCAGCAGGGGGAAAGGGAAGCGGATTTCATCAATTGTGTTGTTT
GGAGAAAACAGGCTGAAAATGTGGCCAACTACTTGAAAAAAGGAAGTCTGGCAGGCGTAGACGGCCGGATTCAGACACGC
AACTACGAAGCCCAGGATGGCCGGCGCGTGTATGTCACAGAGGTCGTGGCAGAAAGCGTCCAGTTTCTTGAACCGAGAAG
CGCGAATCAGGAACGCAGCAGCAGCCAGAATTACGGGAACAACCAAGGGAATGCTTTCCCGGGGTACAACCAGGATCAAA
ACCAGAATCAGCGCAATCAAAGTTATTCAAAGCCGGATGAAGATCCGTTCTCAAATGATGGACAACCAATTGACATCTCT
GATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150KHY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.455

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

63.855

0.416
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373
  ssb Neisseria meningitidis MC58

34.857

100

0.367
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.361
  ssb Vibrio cholerae strain A1552

33.333

100

0.361