Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHQ36_RS03725 Genome accession   NZ_CP107860
Coordinates   744612..745214 (+) Length   200 a.a.
NCBI ID   WP_330302290.1    Uniprot ID   A0ABW2VT56
Organism   Streptomyces sp. NBC_00500     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 739612..750214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS03705 (OHQ36_03680) - 741451..741933 (-) 483 WP_330302286.1 VOC family protein -
  OHQ36_RS03710 (OHQ36_03685) - 742058..743254 (+) 1197 WP_330302287.1 epoxide hydrolase family protein -
  OHQ36_RS03715 (OHQ36_03690) - 743386..743817 (+) 432 WP_330302288.1 (2Fe-2S) ferredoxin domain-containing protein -
  OHQ36_RS03720 (OHQ36_03695) clpP 743957..744610 (+) 654 WP_330302289.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHQ36_RS03725 (OHQ36_03700) clpP 744612..745214 (+) 603 WP_330302290.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHQ36_RS03730 (OHQ36_03705) - 745255..745707 (-) 453 WP_330302291.1 helix-turn-helix transcriptional regulator -
  OHQ36_RS03735 (OHQ36_03710) - 745789..746310 (-) 522 WP_330309969.1 DinB family protein -
  OHQ36_RS03740 (OHQ36_03715) - 746469..746951 (+) 483 WP_330302292.1 hypothetical protein -
  OHQ36_RS03745 (OHQ36_03720) - 747006..748736 (+) 1731 WP_406501278.1 multicopper oxidase family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21746.71 Da        Isoelectric Point: 5.0288

>NTDB_id=647041 OHQ36_RS03725 WP_330302290.1 744612..745214(+) (clpP) [Streptomyces sp. NBC_00500]
MGTYTIPNVIERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSNPESEIAIYINSPGGSFTSLMAIY
DTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLGQPASGGRQGTVSDLTLQAKEMLRIRSQVEEVLSRH
THHDVATLRADMDRDKVFTAQEAVAYGIVDEVVSRRLAVV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=647041 OHQ36_RS03725 WP_330302290.1 744612..745214(+) (clpP) [Streptomyces sp. NBC_00500]
ATGGGTACGTACACGATTCCGAACGTCATCGAGCGGACCCCGCAGGGCGAGCGGTCGTACGACGTCTTCAGCCGGCTGCT
GTCCGAGCGGATCATCTTTCTCGGCACGGAGATCGACGACGGCGTCGCGAACGTCGTCATCGCGCAACTCCTCCATCTGG
AGTCCTCGAACCCGGAGAGCGAGATCGCGATCTACATCAACTCGCCCGGTGGTTCGTTCACTTCGCTCATGGCGATCTAC
GACACGATGACGTTCGTGCAGGCGCCGATCTCGACGTTCTGCGTCGGGCAGGCGGCCTCGACGGCGGCGGTGCTGCTGGC
CGGGGGCGATCCGGGGCGGCGGTTCGTGCTGGAGCACGCGCGGGTGCTGCTCGGCCAGCCGGCCAGCGGCGGCCGGCAGG
GCACGGTCTCGGACCTCACTCTCCAGGCCAAGGAGATGCTCCGCATCCGCTCCCAGGTCGAGGAGGTCCTCTCCCGGCAC
ACGCACCACGACGTCGCGACACTGCGCGCGGACATGGACCGCGACAAGGTCTTCACCGCACAGGAGGCGGTGGCGTACGG
GATCGTGGACGAGGTGGTGAGCCGGCGGCTCGCGGTGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.619

94.5

0.45
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.316

95

0.44
  clpP Streptococcus mutans UA159

40.212

94.5

0.38
  clpP Streptococcus pneumoniae R6

39.583

96

0.38
  clpP Streptococcus pneumoniae TIGR4

39.583

96

0.38
  clpP Streptococcus pneumoniae Rx1

39.583

96

0.38
  clpP Streptococcus pneumoniae D39

39.583

96

0.38
  clpP Streptococcus pyogenes JRS4

39.683

94.5

0.375
  clpP Streptococcus pyogenes MGAS315

39.683

94.5

0.375
  clpP Lactococcus lactis subsp. cremoris KW2

38.743

95.5

0.37
  clpP Streptococcus thermophilus LMG 18311

38.021

96

0.365
  clpP Streptococcus thermophilus LMD-9

38.021

96

0.365