Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L0M13_RS17725 Genome accession   NZ_CP090977
Coordinates   3403160..3403630 (-) Length   156 a.a.
NCBI ID   WP_052649571.1    Uniprot ID   A0A098EHA6
Organism   Planococcus sp. 107-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3398160..3408630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0M13_RS17705 (L0M13_17705) rplI 3399202..3399651 (-) 450 WP_235197724.1 50S ribosomal protein L9 -
  L0M13_RS17710 (L0M13_17710) - 3399648..3401624 (-) 1977 WP_235197725.1 DHH family phosphoesterase -
  L0M13_RS17715 (L0M13_17715) - 3401638..3402588 (-) 951 WP_235197726.1 YybS family protein -
  L0M13_RS17720 (L0M13_17720) rpsR 3402872..3403108 (-) 237 WP_052649572.1 30S ribosomal protein S18 -
  L0M13_RS17725 (L0M13_17725) ssbA 3403160..3403630 (-) 471 WP_052649571.1 single-stranded DNA-binding protein Machinery gene
  L0M13_RS17730 (L0M13_17730) rpsF 3403675..3403962 (-) 288 WP_235197727.1 30S ribosomal protein S6 -
  L0M13_RS17735 (L0M13_17735) - 3404319..3404696 (+) 378 WP_311195672.1 DUF3267 domain-containing protein -
  L0M13_RS17740 (L0M13_17740) - 3405031..3405402 (-) 372 WP_235197728.1 gamma-glutamylcyclotransferase -
  L0M13_RS17745 (L0M13_17745) ychF 3405513..3406613 (-) 1101 WP_235199345.1 redox-regulated ATPase YchF -
  L0M13_RS17750 (L0M13_17750) - 3406726..3406929 (-) 204 WP_235197729.1 DUF951 domain-containing protein -
  L0M13_RS17755 (L0M13_17755) - 3406947..3407783 (-) 837 WP_235199346.1 mechanosensitive ion channel family protein -
  L0M13_RS17760 (L0M13_17760) - 3407888..3408601 (-) 714 WP_235197730.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17044.68 Da        Isoelectric Point: 5.2339

>NTDB_id=646887 L0M13_RS17725 WP_052649571.1 3403160..3403630(-) (ssbA) [Planococcus sp. 107-1]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEKETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKNSGAGADRSQGQPSYQQNQSPSQQNHTRVDQDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=646887 L0M13_RS17725 WP_052649571.1 3403160..3403630(-) (ssbA) [Planococcus sp. 107-1]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCTGATCTTCGTTATACGCCAAGCGGAGCGGCAGTAGC
ACGCTTTACACTAGCTGTAAACCGGACTTTCTCCAATGCGCAAGGTGAAAAGGAAACGGATTTTATCAATTGTACGGTTT
GGCGCAAGCAAGCTGAAAACACGGCGAACTTCTTGAAAAAAGGAAGCCTCGCTGGTGTAGAAGGCCGCATTCAAACTGGC
AGCTACGAGGGACAAGACGGAAAACGCGTTTACACGACTGAAGTAGTAGCAGACAGTGTTCAATTCCTTGAACCTAAAAA
TTCTGGTGCTGGTGCAGATCGTTCACAAGGGCAGCCATCTTATCAGCAGAACCAATCGCCAAGTCAGCAAAACCATACCC
GTGTAGATCAAGACCCATTCTCAAGCGGCAGCGGCCCGATCGAAGTATCGGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098EHA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.884

100

0.66
  ssb Latilactobacillus sakei subsp. sakei 23K

53.488

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.487

72.436

0.474
  ssb Neisseria gonorrhoeae MS11

35.26

100

0.391
  ssb Vibrio cholerae strain A1552

34.286

100

0.385
  ssb Neisseria meningitidis MC58

33.721

100

0.372
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365