Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   L0M13_RS10925 Genome accession   NZ_CP090977
Coordinates   2060613..2061866 (-) Length   417 a.a.
NCBI ID   WP_235196547.1    Uniprot ID   -
Organism   Planococcus sp. 107-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2055613..2066866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0M13_RS10905 (L0M13_10905) - 2056028..2056453 (-) 426 WP_052651316.1 RicAFT regulatory complex protein RicA family protein -
  L0M13_RS10910 (L0M13_10910) - 2056719..2057516 (-) 798 WP_235196545.1 TIGR00282 family metallophosphoesterase -
  L0M13_RS10915 (L0M13_10915) rny 2057583..2059142 (-) 1560 WP_235196546.1 ribonuclease Y -
  L0M13_RS10920 (L0M13_10920) recA 2059380..2060439 (-) 1060 Protein_2136 recombinase RecA -
  L0M13_RS10925 (L0M13_10925) cinA 2060613..2061866 (-) 1254 WP_235196547.1 competence/damage-inducible protein A Machinery gene
  L0M13_RS10930 (L0M13_10930) pgsA 2061901..2062479 (-) 579 WP_235196548.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L0M13_RS10935 (L0M13_10935) - 2062527..2062775 (-) 249 WP_235196549.1 DUF4115 domain-containing protein -
  L0M13_RS10940 (L0M13_10940) - 2062772..2063395 (-) 624 WP_235196550.1 RodZ family helix-turn-helix domain-containing protein -
  L0M13_RS10945 (L0M13_10945) - 2063413..2064209 (-) 797 Protein_2141 YmfK family protein -
  L0M13_RS10950 (L0M13_10950) ymfI 2064399..2065118 (-) 720 WP_235196551.1 elongation factor P 5-aminopentanone reductase -
  L0M13_RS10955 (L0M13_10955) yfmH 2065115..2066416 (-) 1302 WP_235196552.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45484.63 Da        Isoelectric Point: 4.6670

>NTDB_id=646873 L0M13_RS10925 WP_235196547.1 2060613..2061866(-) (cinA) [Planococcus sp. 107-1]
MNAEIIAVGSELLLGQITNSNARFLSNHLAELGINVYYHTVVGDNSERLKETIKIAESRADLIIFTGGLGPTKDDLTKET
IARHLGTTLDMDQEALDSIVAFFERAGRAMTENNKKQALVLKDSDVLVNNHGMAPGMLYKTETHTYMLLPGPPKEMEPMF
QYEAKPKLAKMLNQADVIVSHVLRFYGIGEAELEDRIQDILEQQTNPTIAPLASDGEVTLRITAKTNTEEQAWKLIEEAK
ASLLERAGDYLYGYDNDSLASKAIELLREQQKTISAAESLTAGLFQSELAAVAGASSALAGGVITYNEEMKISQLGISSE
LLAEYGVVSEETAIAMAEAVRMKFNTDISVSLTGAAGPDAHGDQPAGTVWIGISTEEETRAYRLQLSGMRNTNRLRAVKL
ALSYIIRTLTDGNARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=646873 L0M13_RS10925 WP_235196547.1 2060613..2061866(-) (cinA) [Planococcus sp. 107-1]
ATGAATGCTGAAATTATTGCTGTAGGATCTGAACTGCTGCTCGGGCAGATTACAAATTCAAATGCCCGCTTTTTATCGAA
CCATTTAGCAGAGCTTGGAATTAATGTATATTACCATACGGTAGTCGGGGACAATTCAGAGCGTTTGAAAGAAACAATCA
AAATTGCAGAAAGCCGTGCAGATTTGATTATTTTCACTGGCGGCTTAGGACCGACGAAAGATGATTTGACGAAGGAAACG
ATTGCACGCCATTTAGGGACAACTTTAGACATGGACCAGGAAGCGCTTGATTCCATTGTGGCTTTTTTCGAACGGGCTGG
GAGAGCAATGACGGAAAACAATAAAAAGCAGGCATTGGTATTAAAAGACAGCGACGTATTGGTCAATAACCACGGAATGG
CACCCGGGATGCTTTACAAAACCGAAACGCATACGTATATGCTATTGCCAGGGCCTCCTAAAGAAATGGAGCCGATGTTC
CAGTATGAAGCGAAACCGAAACTTGCGAAAATGCTAAACCAAGCTGACGTCATCGTTTCCCACGTTTTGCGTTTTTACGG
CATCGGGGAAGCGGAACTTGAAGACCGCATCCAAGATATTCTGGAGCAGCAGACGAATCCGACTATCGCTCCGCTTGCTT
CTGACGGGGAAGTAACGCTGCGTATTACAGCGAAGACCAATACAGAAGAGCAGGCTTGGAAGTTGATAGAAGAGGCGAAA
GCATCTCTTCTTGAGCGCGCAGGCGACTATTTGTACGGTTATGACAACGATTCGCTGGCTTCAAAAGCGATTGAGTTGCT
TCGCGAACAGCAGAAGACAATCTCAGCTGCCGAGAGTTTGACTGCCGGGCTCTTCCAATCTGAATTGGCTGCTGTAGCAG
GAGCTAGTTCAGCGCTTGCTGGCGGCGTCATCACCTATAATGAAGAAATGAAAATCAGCCAATTGGGCATTTCAAGTGAA
CTGCTTGCCGAGTACGGCGTCGTCAGTGAAGAAACCGCTATTGCGATGGCTGAAGCGGTCCGCATGAAATTCAACACGGA
CATCAGTGTCAGTTTAACGGGGGCTGCAGGTCCAGACGCTCATGGCGACCAGCCTGCCGGGACTGTATGGATCGGGATTT
CAACAGAAGAAGAAACGAGAGCCTACCGGCTGCAATTGTCCGGGATGCGCAACACGAACCGTCTCAGAGCAGTGAAATTG
GCGCTGTCGTATATAATACGAACACTGACTGACGGAAATGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.071

97.602

0.518
  cinA Streptococcus mutans UA159

46.618

99.281

0.463
  cinA Streptococcus mitis SK321

45.107

100

0.453
  cinA Streptococcus mitis NCTC 12261

44.869

100

0.451
  cinA Streptococcus pneumoniae TIGR4

43.914

100

0.441
  cinA Streptococcus pneumoniae Rx1

43.675

100

0.439
  cinA Streptococcus pneumoniae R6

43.675

100

0.439
  cinA Streptococcus pneumoniae D39

43.437

100

0.436