Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L1P01_RS03045 Genome accession   NZ_CP090973
Coordinates   668118..669389 (-) Length   423 a.a.
NCBI ID   WP_012915193.1    Uniprot ID   D2UBN2
Organism   Xanthomonas albilineans strain Xa04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 663118..674389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P01_RS03025 - 664056..664733 (+) 678 WP_045728928.1 response regulator transcription factor -
  L1P01_RS03030 - 665229..666539 (+) 1311 WP_012915190.1 HAMP domain-containing sensor histidine kinase -
  L1P01_RS03035 coaE 666612..667235 (-) 624 WP_012915191.1 dephospho-CoA kinase -
  L1P01_RS03040 - 667248..668111 (-) 864 WP_012915192.1 A24 family peptidase -
  L1P01_RS03045 pilC 668118..669389 (-) 1272 WP_012915193.1 type II secretion system F family protein Machinery gene
  L1P01_RS03050 - 669754..670191 (+) 438 WP_012915194.1 pilin -
  L1P01_RS03055 pilB 670341..672068 (+) 1728 WP_012915195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L1P01_RS03060 pilR 672212..673600 (-) 1389 WP_012915196.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46262.73 Da        Isoelectric Point: 10.2315

>NTDB_id=646795 L1P01_RS03045 WP_012915193.1 668118..669389(-) (pilC) [Xanthomonas albilineans strain Xa04]
MSATRSAVKSAVKKEPVARATSQQIQFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPTVVKPKPKPLFGAAGSKV
TPKDIAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVEQIRTDIEGGSSLYEAISRHPVQFDELYRNLVKAGEGA
GVLETVLETVATYKENIEALKGKIKKALFYPAMVMAVAVIVSCILLVWVVPQFEDVFKGFGAQLPAFTQMIVTASRFMVA
YWWMMLIVVIGSIVGFTFAYKRSPAMQHGMDRLILKVPVIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNS
VYEKSVLRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLMEPLIMVFI
GTIVGGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=646795 L1P01_RS03045 WP_012915193.1 668118..669389(-) (pilC) [Xanthomonas albilineans strain Xa04]
ATGTCCGCAACTCGCAGCGCAGTCAAGAGCGCAGTCAAAAAAGAACCGGTCGCGCGCGCTACCAGCCAACAAATTCAGTT
CGTCTGGGAGGGCACCGACAAACGCGGCGTCAAGATGAAGGGCGAGCAGACGGCCAAAAACGCCAACCTGCTGCGCGCGG
AACTGCGCCGCCAGGGCATCACCCCCACCGTGGTCAAGCCCAAGCCCAAGCCCTTGTTCGGCGCGGCGGGCAGCAAGGTC
ACCCCCAAGGACATCGCCTTCTTCAGCCGGCAAATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTGGGGTCGCTGGA
GATCATCGCCAGCGGGCACAAGAACCCGCGCATGAAAAAGATGGTCGAGCAGATCCGCACCGATATCGAGGGCGGCTCCT
CGCTCTACGAAGCGATCAGCCGGCATCCGGTGCAGTTCGACGAGTTGTACCGCAATCTGGTCAAGGCCGGCGAAGGCGCT
GGCGTTCTCGAAACCGTGCTGGAAACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTTAAAGGCAAGATCAAGAAGGC
CTTGTTCTATCCGGCCATGGTGATGGCCGTCGCAGTGATCGTCAGCTGCATCCTGCTGGTCTGGGTGGTGCCGCAGTTCG
AGGACGTGTTCAAGGGCTTCGGCGCGCAACTGCCGGCCTTCACCCAGATGATCGTGACGGCCTCGCGCTTCATGGTCGCG
TATTGGTGGATGATGCTGATCGTGGTGATCGGCAGCATCGTGGGCTTCACCTTCGCCTACAAGCGCTCGCCAGCCATGCA
GCATGGCATGGACCGGCTGATCCTGAAGGTGCCGGTCATCGGCCAGATCATGCACAACAGTTCGGTGGCGCGCTTCTCGC
GCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGTTGGTGGAAGCGCTGGACATCGTCGCTGGCGCCACCGGCAACAGC
GTCTACGAAAAATCCGTCTTGCGCATGCGCGACGACGTGGCGGTCGGCTACCCGGTGAACGTGGCGATGAAGCAGACCAA
TCTGTTTCCGCACATGGTGATCCAGATGACCGCCATCGGCGAGGAGGCCGGCGCGCTGGACGCGATGCTGTTCAAGGTGG
CCGAGTATTTCGAACAGGAAGTCAACAACGCGGTCGATGCCTTGAGCAGCCTGATGGAACCGCTGATCATGGTGTTCATC
GGCACCATCGTCGGCGGCATGGTCATCGGCATGTATCTACCGATCTTCAAGCTGGCCTCGGTGGTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2UBN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

93.617

0.496
  pilC Acinetobacter baumannii D1279779

52.645

93.853

0.494
  pilC Legionella pneumophila strain ERS1305867

52.261

94.09

0.492
  pilC Acinetobacter baylyi ADP1

51.385

93.853

0.482
  pilG Neisseria gonorrhoeae MS11

43.069

95.508

0.411
  pilG Neisseria meningitidis 44/76-A

42.574

95.508

0.407
  pilC Vibrio cholerae strain A1552

42.211

94.09

0.397
  pilC Vibrio campbellii strain DS40M4

39.152

94.799

0.371