Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   L1F30_RS17595 Genome accession   NZ_CP090959
Coordinates   1880268..1880582 (+) Length   104 a.a.
NCBI ID   WP_371922655.1    Uniprot ID   -
Organism   Simiduia sp. 21SJ11W-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1875268..1885582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F30_RS08285 (L1F30_08285) - 1875371..1877647 (+) 2277 WP_253361538.1 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase -
  L1F30_RS08290 (L1F30_08290) - 1877745..1879097 (+) 1353 WP_253361540.1 phosphomannomutase CpsG -
  L1F30_RS08295 (L1F30_08295) galU 1879122..1880009 (+) 888 WP_253361542.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L1F30_RS17595 comEA/comE1 1880268..1880582 (+) 315 WP_371922655.1 ComEA family DNA-binding protein Machinery gene
  L1F30_RS08305 (L1F30_08305) cmk 1880805..1881482 (+) 678 WP_253361544.1 (d)CMP kinase -
  L1F30_RS08310 (L1F30_08310) rpsA 1881652..1883340 (+) 1689 WP_253361546.1 30S ribosomal protein S1 -
  L1F30_RS08315 (L1F30_08315) ihfB 1883620..1883916 (+) 297 WP_253361548.1 integration host factor subunit beta -
  L1F30_RS08320 (L1F30_08320) - 1883919..1884200 (+) 282 WP_253361550.1 LapA family protein -
  L1F30_RS08325 (L1F30_08325) - 1884260..1885384 (+) 1125 WP_253361552.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11129.14 Da        Isoelectric Point: 11.0484

>NTDB_id=646691 L1F30_RS17595 WP_371922655.1 1880268..1880582(+) (comEA/comE1) [Simiduia sp. 21SJ11W-1]
MRKFRNATFLFLALVSSSVAVYLPAVATAAEKPVATAQVQTVNINTATAEQLAAALKGVGLKKAQAIIEYRNKVGKFVKV
EQLAEVKGIGAATIEKNRTRITLK

Nucleotide


Download         Length: 315 bp        

>NTDB_id=646691 L1F30_RS17595 WP_371922655.1 1880268..1880582(+) (comEA/comE1) [Simiduia sp. 21SJ11W-1]
ATGCGTAAATTTCGCAATGCAACATTCTTGTTTCTCGCCCTTGTTTCATCATCAGTAGCGGTTTATTTGCCGGCAGTCGC
AACAGCCGCAGAAAAACCTGTAGCAACCGCACAAGTTCAAACCGTTAACATCAATACTGCCACTGCCGAGCAATTGGCTG
CTGCACTTAAAGGTGTGGGCTTAAAGAAAGCGCAGGCCATTATTGAATACCGCAATAAGGTGGGTAAGTTTGTAAAGGTT
GAGCAGCTTGCAGAGGTTAAAGGCATAGGCGCGGCCACCATAGAGAAAAACCGCACCCGCATTACCTTGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.903

100

0.51
  comEA Vibrio cholerae C6706

50

90.385

0.452
  comEA Vibrio cholerae strain A1552

50

90.385

0.452
  comEA Acinetobacter baumannii strain A118

33.333

100

0.433
  comE1/comEA Haemophilus influenzae Rd KW20

57.143

74.038

0.423
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.583

92.308

0.365
  comEA/celA/cilE Streptococcus mitis NCTC 12261

39.583

92.308

0.365