Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG734_RS11270 Genome accession   NZ_CP107780
Coordinates   2711081..2711764 (-) Length   227 a.a.
NCBI ID   WP_330287362.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2706081..2716764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS11250 (OG734_11290) - 2707272..2707952 (+) 681 WP_330287358.1 response regulator -
  OG734_RS11255 (OG734_11295) - 2708111..2708803 (+) 693 WP_330287359.1 response regulator -
  OG734_RS11260 (OG734_11300) - 2708856..2710448 (-) 1593 WP_330287360.1 cation acetate symporter -
  OG734_RS11265 (OG734_11305) - 2710445..2711011 (-) 567 WP_330287361.1 DUF485 domain-containing protein -
  OG734_RS11270 (OG734_11310) vraR 2711081..2711764 (-) 684 WP_330287362.1 response regulator transcription factor Regulator
  OG734_RS11275 (OG734_11315) - 2711761..2712912 (-) 1152 WP_330287363.1 histidine kinase -
  OG734_RS11280 (OG734_11320) - 2712909..2713472 (-) 564 WP_330293629.1 DUF1453 domain-containing protein -
  OG734_RS11285 (OG734_11325) - 2713678..2715798 (-) 2121 WP_330287364.1 DNA topoisomerase IV subunit B -
  OG734_RS11290 (OG734_11330) - 2716250..2716480 (+) 231 WP_044471628.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24393.82 Da        Isoelectric Point: 4.7893

>NTDB_id=646010 OG734_RS11270 WP_330287362.1 2711081..2711764(-) (vraR) [Streptomyces sp. NBC_00576]
MTEEAGRESARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGDEAVQLVAELAPDVVLMDLRMPRCDGVEATRRIRAE
YPGTQVVVLTTFADDESLFRALRAGARGYLTKDADGDEIVRAVHSVLSGDAGLSPSIQRRLLERLTEPEKKQDAPAEPPD
GLTTRETEVLMLIADGLSNQEIAIKLHVSTATVKTHINNLFAKTGIKDRAQAVRYAYGKGLVRPPTG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=646010 OG734_RS11270 WP_330287362.1 2711081..2711764(-) (vraR) [Streptomyces sp. NBC_00576]
ATGACGGAGGAGGCCGGCCGGGAATCCGCGCGGGTGGTGGTCGCGGACGACCAGACCGTCGTACGGGAAGGCATCGTGAT
GCTGCTCGGTCTGCTGCCCGGGATCGAGGTAGTCGGAGCGGCCGGGGACGGGGACGAGGCCGTGCAGCTGGTCGCCGAAC
TGGCGCCGGACGTGGTCCTGATGGACCTGCGCATGCCGCGTTGTGACGGCGTCGAGGCGACTCGGCGGATCAGGGCGGAG
TATCCCGGGACCCAGGTCGTGGTGCTCACGACGTTCGCGGACGACGAGTCGCTGTTCCGCGCGCTGCGGGCAGGCGCGCG
CGGCTATCTCACAAAGGACGCGGACGGCGACGAAATCGTCAGGGCGGTGCACAGCGTGCTGTCCGGGGACGCGGGGCTGT
CGCCGAGCATCCAGCGGCGGCTCCTGGAGCGGCTGACGGAGCCTGAGAAGAAGCAGGACGCGCCCGCCGAGCCGCCCGAC
GGGCTCACCACGAGGGAGACCGAGGTGCTGATGCTGATCGCGGACGGCCTCAGCAACCAGGAGATCGCAATCAAGCTGCA
TGTCTCCACGGCGACCGTGAAGACCCACATCAACAACCTCTTCGCCAAGACGGGAATCAAGGACCGTGCGCAGGCGGTGC
GTTACGCCTATGGGAAGGGGTTGGTGCGTCCCCCCACGGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-216)

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.465

94.714

0.383
  degU Bacillus subtilis subsp. subtilis str. 168

37.5

98.678

0.37