Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG734_RS07105 Genome accession   NZ_CP107780
Coordinates   1675007..1676011 (+) Length   334 a.a.
NCBI ID   WP_330286609.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1670007..1681011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS07085 (OG734_07120) - 1671015..1672520 (-) 1506 WP_330286605.1 ABC transporter substrate-binding protein -
  OG734_RS07090 (OG734_07125) - 1672639..1673175 (-) 537 WP_330286606.1 GNAT family N-acetyltransferase -
  OG734_RS07095 (OG734_07130) - 1673369..1674319 (+) 951 WP_330286607.1 ATP-binding protein -
  OG734_RS07100 (OG734_07135) - 1674378..1674770 (+) 393 WP_330286608.1 SCO5389 family protein -
  OG734_RS07105 (OG734_07140) rpoS 1675007..1676011 (+) 1005 WP_330286609.1 RNA polymerase sigma factor Regulator
  OG734_RS07110 (OG734_07145) - 1676091..1676186 (-) 96 Protein_1418 esterase -
  OG734_RS07115 (OG734_07150) - 1676520..1677836 (+) 1317 WP_330286610.1 DUF3533 domain-containing protein -
  OG734_RS07120 (OG734_07155) sthA 1677928..1679331 (+) 1404 WP_330286611.1 Si-specific NAD(P)(+) transhydrogenase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37457.55 Da        Isoelectric Point: 4.7954

>NTDB_id=646006 OG734_RS07105 WP_330286609.1 1675007..1676011(+) (rpoS) [Streptomyces sp. NBC_00576]
MATDTEVTDVFDPATEDESDAPLPRLATGGGSVDQVRDYLRLIARVRLLSAEQEVDLAKRIEAGLYAEYKLLEEPPSDAV
LQRELEILAADAQRAKSHLIEANLRLVVSVAKRYTGRGLLFLDLVQEGNTGLIRAVEKFDYAKGFKFSTYATWWIRQAIS
RALADQGRTIRIPVHLVEVINRVARTRRELIQDFGTEPTPEELAEKAGVPVERLSELTAYTREPVSLHTALGEDGDGEFG
DLIEDRDSVTPMDMVTFLLLQETIQSILAEMSPREAGIISLRYGLSGGRTRTLEEIGQVYGVTRERIRQIESKTMSKLRH
PSRSQVLRDYLDAM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=646006 OG734_RS07105 WP_330286609.1 1675007..1676011(+) (rpoS) [Streptomyces sp. NBC_00576]
ATGGCGACCGACACCGAGGTGACCGATGTGTTCGACCCGGCCACCGAGGACGAGAGCGACGCTCCCCTCCCCCGACTCGC
CACCGGGGGTGGCTCGGTCGACCAGGTGCGGGACTACCTCCGGCTCATCGCCCGGGTCCGGCTCCTCAGCGCCGAGCAGG
AGGTCGACCTCGCGAAACGGATCGAGGCCGGGCTGTACGCGGAGTACAAGCTCCTGGAAGAACCGCCCTCAGACGCCGTA
CTCCAGCGGGAGTTGGAGATCCTCGCCGCGGACGCACAGCGCGCCAAGTCCCACCTCATCGAGGCGAACCTCCGCCTGGT
GGTGTCGGTCGCCAAACGCTACACGGGTCGCGGACTGTTGTTCCTGGACCTGGTCCAGGAGGGCAACACGGGCCTGATCC
GGGCCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATCCGGCAGGCGATCTCG
CGCGCACTGGCGGACCAGGGCCGGACCATCCGCATCCCCGTACACCTGGTGGAAGTCATCAACCGGGTGGCCCGTACCCG
CCGCGAGCTGATCCAGGACTTCGGGACGGAGCCCACACCGGAGGAACTGGCGGAGAAGGCGGGCGTCCCCGTGGAGCGAC
TGTCGGAACTCACCGCCTACACCAGGGAGCCCGTCTCGCTGCACACCGCCCTCGGCGAGGACGGTGACGGCGAGTTCGGC
GACCTGATCGAGGACAGAGACAGTGTCACCCCGATGGACATGGTCACCTTCCTGCTGCTCCAGGAGACCATCCAGTCCAT
CCTCGCGGAGATGTCCCCTCGGGAGGCCGGGATCATCTCCCTGCGCTACGGCCTGTCCGGCGGCCGCACCAGAACCCTGG
AGGAGATCGGCCAGGTGTACGGCGTCACCCGCGAACGCATCCGCCAGATCGAGTCCAAGACGATGTCCAAGCTGCGCCAC
CCGTCCCGCTCCCAGGTGCTGCGGGACTATCTCGACGCGATGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70 region 3 (Sigma70_r3)

(178-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(36-67)

Sigma-70, region 4 (Sigma70_r4)

(268-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

38.941

96.108

0.374