Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG734_RS11400 Genome accession   NZ_CP107780
Coordinates   2744918..2745697 (+) Length   259 a.a.
NCBI ID   WP_053743545.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2739918..2750697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS11390 (OG734_11430) - 2740797..2743694 (-) 2898 WP_330287382.1 vitamin B12-dependent ribonucleotide reductase -
  OG734_RS11395 (OG734_11435) nrdR 2743860..2744408 (-) 549 WP_330287383.1 transcriptional regulator NrdR -
  OG734_RS11400 (OG734_11440) dinR/lexA 2744918..2745697 (+) 780 WP_053743545.1 transcriptional repressor LexA Regulator
  OG734_RS11405 (OG734_11445) - 2745854..2747866 (-) 2013 WP_330287384.1 ATP-dependent DNA helicase -
  OG734_RS11410 (OG734_11450) - 2747951..2748712 (-) 762 WP_330287385.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28034.76 Da        Isoelectric Point: 7.4756

>NTDB_id=646011 OG734_RS11400 WP_053743545.1 2744918..2745697(+) (dinR/lexA) [Streptomyces sp. NBC_00576]
MTTTADSATITAQDRSQGRLEPVHAMNEATNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYQP
IPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=646011 OG734_RS11400 WP_053743545.1 2744918..2745697(+) (dinR/lexA) [Streptomyces sp. NBC_00576]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCCTGAGGGACACAAGCGGTCCCTCCCTGGACGACCTCCAGGAATCCGAGCGGACAGCTCGGGACTCA
CAGACCGGCAACGGCGCGTGATCGAGGTCATCAGGGACTCCGTGCAACGACGCGGTTACCCGCCGTCGATGCGTGAGATC
GGGCAGGCAGTCGGCCTCTCCAGTACCTCATCCGTCGCACACCAGCTCATGGCCCTGGAGCGCAAGGGATTCCTGCGCCG
CGATCCGCATCGCCCGCGCGCCTATGAAGTACGGGGTTCCGACCAAGGGGCTTCCGTGCAGCCCACGGACACCGCGGGCA
AACCCGCCGCGTCGTACGTCCCGCTTGTGGGACGTATCGCCGCCGGCGGTCCCATCCTCGCCGAGGAATCGGTCGAGGAC
GTGTTCCCCCTCCCCCGCCAACTGGTGGGTGACGGAGAGCTCTTCGTACTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTGACGGTACGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTGG
AAGGCGAAGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACTCCGCCTACCAGCCG
ATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCAGTCCTCCGCCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.498

81.467

0.371