Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG974_RS12505 Genome accession   NZ_CP107757
Coordinates   2823604..2824245 (-) Length   213 a.a.
NCBI ID   WP_327282765.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00597     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2818604..2829245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG974_RS12475 (OG974_12470) - 2818894..2819670 (-) 777 WP_328762312.1 sulfite exporter TauE/SafE family protein -
  OG974_RS12480 (OG974_12475) - 2819781..2820773 (-) 993 WP_327282761.1 SPFH domain-containing protein -
  OG974_RS12485 (OG974_12480) - 2820868..2821296 (-) 429 WP_327282762.1 NfeD family protein -
  OG974_RS12490 (OG974_12485) - 2821385..2822185 (-) 801 WP_054222280.1 ABC transporter ATP-binding protein -
  OG974_RS12495 (OG974_12490) - 2822341..2823123 (+) 783 WP_327282763.1 hypothetical protein -
  OG974_RS12500 (OG974_12495) - 2823207..2823452 (-) 246 WP_371646464.1 chaplin -
  OG974_RS12505 (OG974_12500) vraR 2823604..2824245 (-) 642 WP_327282765.1 response regulator transcription factor Regulator
  OG974_RS12510 (OG974_12505) - 2824238..2825383 (-) 1146 WP_327282766.1 GAF domain-containing sensor histidine kinase -
  OG974_RS12515 (OG974_12510) - 2825857..2826582 (+) 726 WP_327282767.1 transglycosylase SLT domain-containing protein -
  OG974_RS12520 (OG974_12515) - 2826684..2829233 (-) 2550 WP_327282768.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23098.39 Da        Isoelectric Point: 5.6405

>NTDB_id=645674 OG974_RS12505 WP_327282765.1 2823604..2824245(-) (vraR) [Streptomyces sp. NBC_00597]
MADAPIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGEEGVARAEELRPDVILMDIKMPGTDGIEALRRLRALAHPA
RVLIVTSFTEQRTVVPALRGGAAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVAQALLSQDGQPSSGRGGSLTEREREVL
SLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGITD

Nucleotide


Download         Length: 642 bp        

>NTDB_id=645674 OG974_RS12505 WP_327282765.1 2823604..2824245(-) (vraR) [Streptomyces sp. NBC_00597]
GTGGCTGACGCACCCATCCGCGTGCTCCTCGTGGACGACCACCAGGTGGTCCGCCGCGGGCTGCGCACCTTCCTGGAGGT
CCAGGACGACATCGAGGTGGTCGGGGAGGCCGCCGACGGGGAGGAGGGCGTGGCACGGGCCGAGGAGCTGCGACCCGACG
TGATCCTCATGGACATCAAGATGCCGGGCACCGACGGCATCGAGGCCCTGCGCAGACTGCGCGCGCTGGCACATCCCGCG
CGGGTACTGATCGTCACGAGCTTCACCGAACAGCGGACGGTGGTGCCGGCACTGCGGGGCGGAGCCGCGGGATACGTCTA
CAAGGACATCGACCCCGAGGCCCTGGCCGGAGCCATCCGCTCCGTCCACGCAGGCCACGTGCTGCTCCAGCCGGAGGTGG
CGCAGGCCCTGCTCTCGCAGGACGGGCAGCCCTCGTCGGGCCGGGGCGGCTCCCTGACCGAACGGGAACGGGAGGTGCTG
TCCCTCATCGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCGCTCGTGCTGTCGGAGAAGACGGTCAAGACGCACGT
CTCGAACATCTTGATGAAACTGGACCTCGCGGACCGCACCCAGGCGGCGTTGTGGGCGGTCCGGCACGGGATCACGGACT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.714

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.394