Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SPB_RS07755 Genome accession   NZ_AEUT02000001
Coordinates   1543429..1545408 (-) Length   659 a.a.
NCBI ID   WP_003102586.1    Uniprot ID   F1YYZ7
Organism   Streptococcus parauberis NCFD 2020     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1538429..1550408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS07735 (SPB_1594) amiF 1538920..1539864 (-) 945 WP_003104982.1 ATP-binding cassette domain-containing protein Regulator
  SPB_RS07740 (SPB_1595) amiE 1539857..1540927 (-) 1071 WP_003104172.1 ABC transporter ATP-binding protein Regulator
  SPB_RS07745 (SPB_1596) amiD 1540936..1541862 (-) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  SPB_RS07750 (SPB_1597) amiC 1541862..1543361 (-) 1500 WP_037621210.1 ABC transporter permease Regulator
  SPB_RS07755 (SPB_1598) amiA3 1543429..1545408 (-) 1980 WP_003102586.1 peptide ABC transporter substrate-binding protein Regulator
  SPB_RS07760 (SPB_1599) pbp3 1545740..1546978 (+) 1239 WP_003103785.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SPB_RS07765 (SPB_1600) pbp3 1547104..1548324 (+) 1221 WP_003104003.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SPB_RS07770 (SPB_1601) - 1548419..1549594 (+) 1176 WP_003102909.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73336.60 Da        Isoelectric Point: 5.2041

>NTDB_id=64561 SPB_RS07755 WP_003102586.1 1543429..1545408(-) (amiA3) [Streptococcus parauberis NCFD 2020]
MKNGKWLAAAGIAVLSVSALTACGNGSSKDSKSKTYSYVYTTDPDTLDYLVSGRSTTSEITQNGVDGLMEYDNEGNLVPS
VAKSWTVSKDGLTYTYKIRKDSKWYTADGEEYAKVTAEDFVTGMKHAADSNSDALYLVQDSIKGLSDYIDGKTKDFSTVG
VKAVDKNTVQYTLKQPESFWNSKLTYGILSPVNADFLKSQGKDFGKASDASSILYNGPFLISALTSKSSIEFTKNENYWD
KEDVHLDAVQLTYYDGQDQESLFRNFDKGAYSAARLFPTTPSYKTAKKKYGENITYAPQKSNIYYATFNLNRTAYDHTKK
TDDKQKEDTRKAVLNKDFRQALTFGFNRKSYTAQSAGEEAASKSLRNMLIPPAFVQIKGEDFGKTVEKDLATYGDQWKDV
SLADAQDGLYNKDKAKAQMDKAKEALEAEGVQFPIHIDMPQDQTATVNMQQAQSMKQSMEDSLGKENVVIDIIELNADTY
NNVTYMAETPTQQDWDISTASGWSPDYLDPSSYLDIFNPSLANAQTKFIGLEPIKDNTIASEAGLDEFTKLANEASKITD
DKDARYEKYAKAQAALADSAVYIPTYSLGGTPAVTKVVPFSAAFGWAGNKSDNTYFKYVQLQDKPVTAKQFNKAMKDWKK
SKEKSNKKYEESLEKHIEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=64561 SPB_RS07755 WP_003102586.1 1543429..1545408(-) (amiA3) [Streptococcus parauberis NCFD 2020]
ATGAAAAATGGGAAATGGTTAGCGGCAGCGGGGATTGCTGTTTTGTCAGTTTCAGCTTTGACTGCCTGTGGTAATGGTTC
AAGTAAAGATAGCAAAAGTAAAACCTATAGCTATGTTTATACAACTGATCCTGATACCTTGGATTACTTAGTTTCAGGGC
GTTCAACAACCAGTGAAATCACCCAAAATGGTGTTGATGGCTTGATGGAATATGACAACGAAGGGAATTTGGTTCCTTCT
GTAGCTAAAAGCTGGACAGTATCAAAAGACGGTTTAACTTATACCTATAAAATACGTAAAGATTCAAAATGGTATACAGC
TGATGGTGAAGAATACGCTAAGGTAACAGCGGAAGACTTTGTGACTGGCATGAAACATGCTGCAGATAGCAATTCTGATG
CCCTTTACCTAGTTCAAGATTCAATTAAAGGTTTAAGTGATTATATCGATGGGAAAACAAAAGATTTCTCAACTGTTGGT
GTTAAAGCCGTTGACAAAAACACAGTTCAATATACATTGAAACAACCAGAAAGTTTCTGGAATTCTAAATTAACTTATGG
TATCTTATCTCCAGTTAATGCAGATTTTCTAAAATCACAAGGTAAAGATTTTGGTAAAGCATCTGATGCTTCATCGATTC
TTTATAACGGACCATTCCTTATCTCCGCATTAACAAGTAAATCATCAATTGAATTTACAAAAAATGAAAACTATTGGGAT
AAAGAAGATGTTCACTTAGATGCTGTTCAATTAACTTACTATGATGGACAAGATCAAGAGTCTCTATTTAGAAACTTTGA
TAAAGGTGCTTATTCGGCTGCACGTTTATTCCCAACAACTCCATCTTACAAGACAGCTAAGAAAAAATATGGCGAAAACA
TCACTTATGCACCTCAAAAATCAAATATTTATTATGCAACATTTAATTTAAACCGTACGGCTTATGACCATACTAAAAAG
ACAGACGATAAACAAAAAGAGGATACTCGTAAAGCAGTTCTAAATAAAGATTTCCGTCAAGCTTTAACATTTGGTTTTAA
CCGTAAATCCTATACAGCTCAATCAGCTGGTGAAGAAGCAGCAAGCAAATCACTTCGTAATATGCTAATTCCACCAGCAT
TTGTTCAAATTAAGGGTGAAGACTTTGGCAAGACTGTTGAAAAAGATTTAGCGACATATGGAGATCAATGGAAAGATGTT
AGCCTAGCTGATGCCCAAGATGGTCTTTACAATAAAGACAAAGCTAAGGCTCAAATGGATAAAGCTAAAGAAGCCTTGGA
AGCTGAAGGTGTTCAATTCCCAATTCACATTGATATGCCTCAAGATCAGACTGCTACCGTAAATATGCAACAAGCCCAAT
CCATGAAGCAATCAATGGAAGACTCACTTGGTAAAGAAAATGTTGTAATTGACATTATTGAGCTCAATGCTGATACCTAT
AACAATGTTACTTATATGGCAGAAACACCAACTCAACAAGATTGGGATATTTCTACAGCTTCTGGATGGAGTCCTGACTA
CTTAGACCCAAGCTCATATCTTGATATCTTTAATCCAAGCTTGGCTAATGCACAAACTAAATTTATTGGACTTGAACCAA
TTAAAGATAATACTATAGCATCTGAAGCTGGTTTAGATGAATTTACTAAATTAGCAAATGAAGCAAGTAAGATTACTGAT
GACAAGGATGCTCGTTATGAAAAATATGCAAAAGCACAAGCTGCTCTTGCGGATTCAGCAGTCTACATTCCAACATACTC
ACTTGGAGGAACGCCTGCAGTAACAAAAGTTGTTCCATTCTCAGCTGCATTTGGTTGGGCAGGTAACAAATCAGATAATA
CATATTTCAAATATGTACAATTACAAGATAAACCTGTAACGGCTAAACAATTCAACAAAGCAATGAAGGATTGGAAAAAG
TCAAAAGAAAAATCAAATAAAAAATATGAAGAGTCATTAGAAAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F1YYZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

52.727

100

0.528
  amiA Streptococcus salivarius strain HSISS4

52.504

100

0.525
  amiA3 Streptococcus thermophilus LMD-9

52.273

100

0.524

Multiple sequence alignment