Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SPB_RS07740 Genome accession   NZ_AEUT02000001
Coordinates   1539857..1540927 (-) Length   356 a.a.
NCBI ID   WP_003104172.1    Uniprot ID   F1YYZ4
Organism   Streptococcus parauberis NCFD 2020     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534857..1545927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS07735 (SPB_1594) amiF 1538920..1539864 (-) 945 WP_003104982.1 ATP-binding cassette domain-containing protein Regulator
  SPB_RS07740 (SPB_1595) amiE 1539857..1540927 (-) 1071 WP_003104172.1 ABC transporter ATP-binding protein Regulator
  SPB_RS07745 (SPB_1596) amiD 1540936..1541862 (-) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  SPB_RS07750 (SPB_1597) amiC 1541862..1543361 (-) 1500 WP_037621210.1 ABC transporter permease Regulator
  SPB_RS07755 (SPB_1598) amiA3 1543429..1545408 (-) 1980 WP_003102586.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39812.74 Da        Isoelectric Point: 5.6483

>NTDB_id=64558 SPB_RS07740 WP_003104172.1 1539857..1540927(-) (amiE) [Streptococcus parauberis NCFD 2020]
MTENKEVILSAKNVVVEFDVRDRVLTAIRDISIDLHEGEVLAVVGESGSGKSVLTKTFTGMLESNGRVASGSIDYRGQEL
TKLKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGKQITEVIVKHQKKPRSEAKKLAIDYMNKVGIPEAEKRFDEYPFQY
SGGMRQRIVIAIALACHPDILICDEPTTALDVTIQAQIIDLLKTLQKEYEFTIIFITHDLGVVASIATNVAVMYAGEVVE
YGTVEDVFYDPRHPYTWSLLSSLPQLADDKGILFSIPGTPPSLYKPIIGDAFAPRSQYAMKIDFEEAVPKFDISDSHWAK
TWLLHPEAPKVQKPVVIQNLHEKISSKQIYREEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=64558 SPB_RS07740 WP_003104172.1 1539857..1540927(-) (amiE) [Streptococcus parauberis NCFD 2020]
ATGACTGAAAATAAAGAAGTAATTTTAAGTGCAAAGAATGTTGTTGTAGAATTTGACGTACGTGACCGTGTTTTGACTGC
CATCCGTGATATCTCTATCGATTTACATGAAGGAGAAGTCCTTGCGGTTGTTGGCGAGTCAGGTAGTGGTAAGTCAGTAC
TAACAAAAACATTTACCGGAATGTTAGAATCTAATGGTCGCGTTGCCTCAGGGTCGATTGATTACCGCGGACAAGAACTA
ACAAAACTAAAAAATCATAAAGATTGGGAAGGAATACGTGGTGCAAAAATTGCGACCATCTTCCAAGACCCGATGACCAG
TTTAGACCCAATTCAAACCATTGGGAAACAAATTACGGAAGTAATAGTTAAACATCAGAAAAAACCTAGATCAGAAGCTA
AAAAACTTGCGATTGATTATATGAATAAAGTTGGTATTCCAGAAGCTGAAAAACGTTTTGATGAATATCCTTTCCAATAC
TCTGGTGGGATGAGACAACGTATCGTTATTGCCATTGCTCTTGCATGTCATCCAGATATCCTTATCTGTGATGAGCCAAC
AACAGCTTTAGACGTTACTATCCAAGCTCAAATTATTGATTTATTAAAAACACTTCAAAAAGAATACGAATTTACAATTA
TCTTCATCACTCATGATTTGGGCGTTGTTGCAAGTATTGCAACCAACGTTGCAGTAATGTATGCTGGCGAAGTTGTTGAG
TATGGAACGGTTGAGGATGTTTTCTATGATCCTCGTCATCCATATACATGGAGTTTATTATCAAGTCTACCTCAATTAGC
AGATGACAAGGGGATTCTCTTTTCAATTCCCGGAACGCCTCCATCTTTATACAAACCAATTATTGGCGACGCCTTTGCTC
CAAGATCTCAGTATGCTATGAAGATTGATTTTGAAGAAGCTGTTCCAAAATTTGACATTAGCGACAGCCATTGGGCTAAA
ACATGGTTACTCCATCCGGAGGCTCCAAAAGTTCAAAAACCAGTAGTTATACAAAATTTACATGAGAAAATCTCAAGTAA
GCAAATTTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F1YYZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.611

100

0.795
  amiE Streptococcus thermophilus LMD-9

78.611

100

0.795
  oppD Streptococcus mutans UA159

56.522

96.91

0.548

Multiple sequence alignment