Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SPB_RS07750 Genome accession   NZ_AEUT02000001
Coordinates   1541862..1543361 (-) Length   499 a.a.
NCBI ID   WP_037621210.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536862..1548361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS07735 (SPB_1594) amiF 1538920..1539864 (-) 945 WP_003104982.1 ATP-binding cassette domain-containing protein Regulator
  SPB_RS07740 (SPB_1595) amiE 1539857..1540927 (-) 1071 WP_003104172.1 ABC transporter ATP-binding protein Regulator
  SPB_RS07745 (SPB_1596) amiD 1540936..1541862 (-) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  SPB_RS07750 (SPB_1597) amiC 1541862..1543361 (-) 1500 WP_037621210.1 ABC transporter permease Regulator
  SPB_RS07755 (SPB_1598) amiA3 1543429..1545408 (-) 1980 WP_003102586.1 peptide ABC transporter substrate-binding protein Regulator
  SPB_RS07760 (SPB_1599) pbp3 1545740..1546978 (+) 1239 WP_003103785.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SPB_RS07765 (SPB_1600) pbp3 1547104..1548324 (+) 1221 WP_003104003.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55848.32 Da        Isoelectric Point: 10.1171

>NTDB_id=64560 SPB_RS07750 WP_037621210.1 1541862..1543361(-) (amiC) [Streptococcus parauberis NCFD 2020]
MKKYIFERILRSLISILLVTTLTYVIVFTLVPTNLIFKQDPNYNKMVTTPDKKDNYRNTIFERMGYVNYYNSKELQSKAE
KMDKTVTIEPTAKNKAVYKKFIKQQGKGWTLKEFEESKEFYAVRNIPIYERVWNFFSHILVIDHPWTIQDPKNPNLERYI
RPEMDPAVGPALVGSGTKHKYLLFFDGNFPFIHQNFVSFDLGTSYPTYANIPVIQVITQGQGRSLSEQTKFPSGVTKFSP
IDITSRTYKSPKDADARDRANFGPKDPYTATKNKHAEPSMIANSFKIGIIGVALSYIIGLPIGMLMAYYKDGIFDRFSTA
ATTFMLALPSIALIYIVRFLGSKIGLPDTFPLLGASDPRSYVLPALILGILGTPGTVVWFRRYIVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAIVATIAGATLTETVFAFPGMGKMLIDAIKAANNSMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=64560 SPB_RS07750 WP_037621210.1 1541862..1543361(-) (amiC) [Streptococcus parauberis NCFD 2020]
ATGAAAAAGTATATATTCGAGCGCATTTTGAGGTCTTTGATTTCAATTTTGTTGGTAACGACATTAACTTATGTCATTGT
TTTTACATTGGTACCAACAAACTTGATTTTTAAACAGGACCCCAACTATAATAAGATGGTTACTACACCAGATAAGAAAG
ATAACTACCGTAATACCATTTTTGAACGCATGGGTTATGTTAATTACTATAATAGTAAAGAACTTCAAAGCAAAGCTGAA
AAAATGGATAAGACCGTAACGATTGAACCAACTGCTAAAAATAAAGCGGTCTACAAAAAATTCATCAAGCAACAAGGTAA
AGGTTGGACGCTGAAAGAATTCGAAGAAAGCAAAGAATTTTATGCGGTTAGAAATATTCCAATCTATGAACGTGTTTGGA
ACTTCTTTAGTCATATCCTTGTTATTGATCATCCTTGGACGATACAAGATCCAAAGAATCCTAATTTGGAACGCTATATT
AGACCCGAAATGGATCCAGCAGTCGGACCTGCCTTAGTTGGTTCTGGAACTAAGCATAAATACTTGCTCTTCTTTGATGG
AAATTTCCCATTCATTCACCAAAACTTTGTTTCCTTTGACTTAGGAACTTCTTATCCAACCTATGCTAATATTCCTGTAA
TTCAGGTTATCACACAAGGACAAGGTAGAAGTCTATCAGAACAAACTAAATTCCCGTCTGGAGTTACTAAGTTTTCACCA
ATTGATATCACAAGTAGAACTTATAAATCACCTAAAGATGCAGATGCTCGTGACCGAGCTAATTTCGGCCCGAAAGATCC
TTATACAGCAACTAAGAATAAACATGCTGAGCCATCAATGATTGCAAATTCATTTAAAATTGGAATCATTGGTGTTGCCT
TGTCATATATTATTGGGCTACCTATTGGTATGCTTATGGCCTATTATAAAGATGGAATTTTTGATCGATTTTCTACAGCA
GCTACAACATTTATGTTGGCTTTGCCAAGTATTGCCTTGATTTATATCGTTCGCTTCTTGGGTTCGAAAATTGGTTTACC
AGATACTTTTCCATTGTTAGGAGCCAGTGATCCAAGATCTTATGTATTGCCTGCATTAATTTTAGGTATTTTAGGAACGC
CAGGAACCGTTGTATGGTTCCGTCGTTATATCGTTGACTTACAAGGAAGCGATTTTGTTCGATTTGCGCGTGCAAAAGGA
TTAACAGAAGCTGAAATTTCAAAAAATCACCTATTTAAGCAAGCGATGGTACCAATTGTTAATGGTATTCCCCAAGCAAT
TGTTGCAACTATCGCAGGTGCGACACTGACTGAAACAGTCTTTGCCTTCCCAGGTATGGGTAAAATGTTAATTGATGCTA
TTAAAGCAGCAAATAACTCAATGGTCGTTGGACTAGTCTTTATCTTTGCAGTCTTATCAATTCTTGCTTTATTAGCAGGG
GACATTTTAATGACTATCTTAGATCCACGTATTAAATTATCAAGTAAAGGAGGGAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

61.122

100

0.611
  amiC Streptococcus thermophilus LMG 18311

60.922

100

0.609
  amiC Streptococcus salivarius strain HSISS4

60.721

100

0.607

Multiple sequence alignment