Detailed information NTG0064557

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SPB_RS07735
• Genome accession: NZ_AEUT02000001
• Coordinates: 1538920..1539864 (-)
• Length: 314 a.a.
• NCBI ID: WP_003104982.1
• Uniprot ID: A0AAE4HY29
• Organism: Streptococcus parauberis NCFD 2020
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1533920..1544864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPB_RS07735 (SPB_1594)	amiF	1538920..1539864 (-)	945	WP_003104982.1	ATP-binding cassette domain-containing protein	Regulator
SPB_RS07740 (SPB_1595)	amiE	1539857..1540927 (-)	1071	WP_003104172.1	ABC transporter ATP-binding protein	Regulator
SPB_RS07745 (SPB_1596)	amiD	1540936..1541862 (-)	927	WP_003104826.1	oligopeptide ABC transporter permease OppC	Regulator
SPB_RS07750 (SPB_1597)	amiC	1541862..1543361 (-)	1500	WP_037621210.1	ABC transporter permease	Regulator

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 35745.06 Da
• Isoelectric Point: 6.9314

>NTDB_id=64557 SPB_RS07735 WP_003104982.1 1538920..1539864(-) (amiF) [Streptococcus parauberis NCFD 2020]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNDTSSGEIIYDGKQINKKKSNS
EREELIKKIQMIFQDPAASLNERATVDYIISEGLYNHKLFKSEEERKDKIKNMMTEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRMQREKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPVHPYTKSLLSAVPIPDPILERQKKLLVYNVDQHDYTVDKPEMVEIQPGHFVWANKLETEKYKKEIADRQQSN

Nucleotide

• Length: 945 bp

>NTDB_id=64557 SPB_RS07735 WP_003104982.1 1538920..1539864(-) (amiF) [Streptococcus parauberis NCFD 2020]
ATGTCTGAGAAGCTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTTGCTGTTAAAAA
TGCCAATTTCTTTATTAATCGAGGGGAAACTTTTTCTTTGGTTGGTGAGTCAGGAAGTGGGAAAACAACAATTGGGCGTG
CTATCATTGGTTTAAATGATACGAGTTCAGGTGAAATCATTTATGATGGTAAACAAATCAATAAGAAAAAAAGTAATTCA
GAACGTGAAGAATTAATTAAAAAGATTCAAATGATCTTTCAAGATCCAGCAGCAAGTTTGAATGAACGTGCAACTGTTGA
CTATATTATTTCTGAAGGACTATACAATCATAAACTGTTCAAAAGTGAAGAAGAACGTAAAGATAAAATCAAAAACATGA
TGACAGAAGTTGGACTTTTGTCTGAACATTTAACACGTTATCCTCATGAATTTTCAGGTGGACAACGTCAGCGTATCGGG
ATTGCGCGTGCTTTAGTTATGGATCCAGAATTTATTATTGCTGATGAGCCTATCTCGGCTCTAGACGTTTCGGTTCGAGC
TCAAGTGCTAAATCTTCTAAAACGGATGCAAAGAGAAAAAGGTTTAACTTATCTCTTTATTGCCCATGATTTATCAGTAG
TTCGGTTCATATCTGATCGAATCGCAGTTATTCATAAAGGTGTTATTGTAGAAGTAGCTGAAACTGAAGAATTATTTATC
AATCCAGTTCATCCATATACTAAATCTCTATTATCCGCTGTACCGATTCCGGATCCAATTTTGGAAAGACAGAAAAAACT
TCTTGTCTATAACGTTGATCAGCATGACTATACAGTTGACAAACCAGAAATGGTAGAAATCCAACCAGGTCATTTCGTTT
GGGCGAATAAATTAGAAACAGAGAAATATAAAAAGGAAATTGCTGATAGACAGCAGTCCAACTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	81.699	97.452	0.796
amiF	Streptococcus thermophilus LMD-9	81.373	97.452	0.793
amiF	Streptococcus salivarius strain HSISS4	81.046	97.452	0.79