Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG888_RS18010 Genome accession   NZ_CP107749
Coordinates   3950618..3951277 (-) Length   219 a.a.
NCBI ID   WP_266719658.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00622     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3945618..3956277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG888_RS18000 (OG888_18005) - 3948011..3949060 (+) 1050 WP_327670357.1 hypothetical protein -
  OG888_RS18005 (OG888_18010) clpX 3949176..3950462 (-) 1287 WP_266719660.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG888_RS18010 (OG888_18015) clpP 3950618..3951277 (-) 660 WP_266719658.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG888_RS18015 (OG888_18020) clpP 3951339..3951944 (-) 606 WP_266725478.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG888_RS18020 (OG888_18025) tig 3952322..3953704 (-) 1383 WP_327670358.1 trigger factor -
  OG888_RS18035 (OG888_18040) - 3954231..3954425 (-) 195 WP_255971564.1 hypothetical protein -
  OG888_RS18040 (OG888_18045) - 3954937..3956094 (+) 1158 WP_327670359.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24088.41 Da        Isoelectric Point: 4.5163

>NTDB_id=645484 OG888_RS18010 WP_266719658.1 3950618..3951277(-) (clpP) [Streptomyces sp. NBC_00622]
MNNFPGSGLYQGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMDPDRDISIY
INSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALTNARVLIHQPSGGTGREQLSDLEIAANE
IMRMRAQLEDMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQVVSTRKMNNEAIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=645484 OG888_RS18010 WP_266719658.1 3950618..3951277(-) (clpP) [Streptomyces sp. NBC_00622]
ATGAACAACTTCCCCGGCAGCGGCCTGTACCAGGGCCCCCAGGTCGACAACCGCTACGTGGTGCCGCGCTTCGTCGAGCG
CACCTCGCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCATCATCTTCCTCGGCGTGCAGATCG
ACGACGCATCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGATCCGGACCGCGACATCTCCATCTAC
ATCAACAGCCCCGGCGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCAGAC
GGTCTGCATGGGCCAGGCCGCCTCCGCGGCCGCCGTCCTGCTGGCCGCCGGCACCCCGGGCAAGCGCATGGCGCTGACCA
ACGCGCGCGTGCTGATCCACCAGCCCTCCGGCGGCACCGGCCGTGAGCAGCTCTCCGACCTGGAGATCGCGGCCAACGAG
ATCATGCGTATGCGTGCGCAGCTGGAAGACATGCTGGCCAAGCACTCGACGACGCCGATCGAGAAGATCCGCGACGACAT
CGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGTACGGTCTGGTCGACCAGGTCGTCTCGACGCGCAAGATGA
ACAACGAGGCGATCGCGTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

86.758

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

85.845

0.425
  clpP Streptococcus pyogenes MGAS315

44.949

90.411

0.406
  clpP Streptococcus pyogenes JRS4

44.949

90.411

0.406
  clpP Streptococcus mutans UA159

44.444

90.411

0.402
  clpP Streptococcus thermophilus LMD-9

44.103

89.041

0.393
  clpP Streptococcus thermophilus LMG 18311

44.103

89.041

0.393
  clpP Streptococcus pneumoniae Rx1

43.367

89.498

0.388
  clpP Streptococcus pneumoniae D39

43.367

89.498

0.388
  clpP Streptococcus pneumoniae R6

43.367

89.498

0.388
  clpP Streptococcus pneumoniae TIGR4

43.367

89.498

0.388
  clpP Lactococcus lactis subsp. cremoris KW2

43.367

89.498

0.388
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.347

89.498

0.379