Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L0994_RS10500 Genome accession   NZ_CP090847
Coordinates   2311058..2311357 (-) Length   99 a.a.
NCBI ID   WP_010439527.1    Uniprot ID   A0AAN0LKD1
Organism   Vibrio cyclitrophicus strain WXL032     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2306058..2316357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0994_RS10475 (L0994_10445) - 2306477..2307709 (+) 1233 WP_016767085.1 pyridoxal phosphate-dependent aminotransferase -
  L0994_RS10480 (L0994_10450) yfbR 2307879..2308463 (+) 585 WP_373929849.1 5'-deoxynucleotidase -
  L0994_RS10485 (L0994_10455) - 2308518..2309861 (+) 1344 WP_010439534.1 anti-phage deoxyguanosine triphosphatase -
  L0994_RS10490 (L0994_10460) - 2309893..2310492 (-) 600 WP_010439531.1 tRNA-uridine aminocarboxypropyltransferase -
  L0994_RS10495 (L0994_10465) rrtA 2310502..2311038 (+) 537 WP_102265265.1 rhombosortase -
  L0994_RS10500 (L0994_10470) comEA 2311058..2311357 (-) 300 WP_010439527.1 helix-hairpin-helix domain-containing protein Machinery gene
  L0994_RS10505 (L0994_10475) ppiD 2311602..2313467 (-) 1866 WP_102313242.1 peptidylprolyl isomerase -
  L0994_RS10510 (L0994_10480) - 2313689..2313961 (-) 273 WP_004736083.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10811.39 Da        Isoelectric Point: 5.1299

>NTDB_id=645225 L0994_RS10500 WP_010439527.1 2311058..2311357(-) (comEA) [Vibrio cyclitrophicus strain WXL032]
MRTIYSTLLLSFLITLSAGVFADSPTKAELYDGIEITVNINKATAEELSALLVGVGDKKAQEIVDYRDKHGAFTKPSDLV
NVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=645225 L0994_RS10500 WP_010439527.1 2311058..2311357(-) (comEA) [Vibrio cyclitrophicus strain WXL032]
ATGCGAACAATATATTCAACATTACTTCTTTCATTTCTAATTACTCTAAGTGCTGGAGTGTTTGCTGATAGTCCGACTAA
GGCAGAGTTGTACGACGGCATTGAAATCACCGTAAACATCAATAAAGCTACGGCTGAGGAATTATCAGCATTACTTGTTG
GTGTGGGTGACAAAAAAGCCCAAGAGATTGTCGATTATCGGGATAAGCATGGTGCATTTACAAAACCCAGTGACTTGGTC
AATGTGAAAGGTATTGGCGAGGCAACGGTTGAAAAGAATCGTGAGCGAATTCAACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

56.383

94.949

0.535
  comEA Vibrio campbellii strain DS40M4

55.435

92.929

0.515
  comEA Vibrio cholerae strain A1552

52.577

97.98

0.515
  comEA Vibrio cholerae C6706

52.577

97.98

0.515
  comE1/comEA Haemophilus influenzae Rd KW20

36.937

100

0.414
  comEA Acinetobacter baylyi ADP1

46.341

82.828

0.384
  comEA Lactococcus lactis subsp. cremoris KW2

44.444

81.818

0.364