Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG961_RS09450 Genome accession   NZ_CP107741
Coordinates   2083761..2084396 (+) Length   211 a.a.
NCBI ID   WP_327669336.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00626     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2078761..2089396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG961_RS09420 (OG961_09405) ureG 2079275..2079952 (-) 678 WP_327664530.1 urease accessory protein UreG -
  OG961_RS09425 (OG961_09410) - 2080130..2080804 (-) 675 WP_327669334.1 urease accessory UreF family protein -
  OG961_RS09430 (OG961_09415) - 2080836..2082557 (-) 1722 WP_327669335.1 urease subunit alpha -
  OG961_RS09435 (OG961_09420) - 2082550..2082861 (-) 312 WP_327664527.1 urease subunit beta -
  OG961_RS09440 (OG961_09425) - 2082878..2083180 (-) 303 WP_266722315.1 urease subunit gamma -
  OG961_RS09445 (OG961_09430) - 2083393..2083683 (-) 291 WP_327664526.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  OG961_RS09450 (OG961_09435) clpP 2083761..2084396 (+) 636 WP_327669336.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG961_RS09455 (OG961_09440) - 2084402..2084710 (+) 309 WP_327664524.1 hypothetical protein -
  OG961_RS09460 (OG961_09445) - 2085272..2085745 (+) 474 WP_327664523.1 C40 family peptidase -
  OG961_RS09465 (OG961_09450) - 2085794..2086267 (+) 474 WP_327664522.1 DUF6328 family protein -
  OG961_RS09470 (OG961_09455) - 2086251..2086688 (-) 438 WP_327664521.1 ATP-binding protein -
  OG961_RS09475 (OG961_09460) - 2086973..2087824 (+) 852 WP_327664520.1 helix-turn-helix transcriptional regulator -
  OG961_RS09480 (OG961_09465) - 2087875..2088084 (+) 210 WP_327669337.1 DUF397 domain-containing protein -
  OG961_RS09485 (OG961_09470) - 2088068..2089237 (-) 1170 WP_327669338.1 8-amino-7-oxononanoate synthase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23104.13 Da        Isoelectric Point: 4.3566

>NTDB_id=645197 OG961_RS09450 WP_327669336.1 2083761..2084396(+) (clpP) [Streptomyces sp. NBC_00626]
MTRPSGRYVLPEFTERTSSGSRTLDPYSKLLEERIVFLGTPIDDISTNDVMAQFMHLEYLAPDQDISLYINSPGGSFSAM
TALYDTMQYVGCDVATTCLGQCSSVAAVILAAGAPGKRMMLPGARVVIDQPSLPEPAQGQPSDLEIYASELVRMRDQLEE
FLALHSGRSKEQVAADIERDTVLTAQQALEYGLVDHIVENRTATLRSPDAR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=645197 OG961_RS09450 WP_327669336.1 2083761..2084396(+) (clpP) [Streptomyces sp. NBC_00626]
ATGACCCGTCCGTCCGGCCGCTATGTCCTGCCCGAGTTCACCGAGCGCACCAGTTCGGGGAGCCGCACCCTCGACCCGTA
TTCGAAGCTCCTGGAAGAGCGCATCGTCTTCCTCGGGACACCGATCGACGACATCTCGACGAACGATGTGATGGCGCAGT
TCATGCACCTCGAGTACCTGGCGCCCGACCAGGACATCTCCCTGTACATCAATTCCCCCGGCGGCTCGTTCAGTGCGATG
ACCGCGCTCTACGACACGATGCAGTACGTCGGTTGCGACGTGGCGACGACCTGTCTGGGGCAGTGCTCGTCCGTGGCCGC
GGTGATCCTTGCGGCGGGGGCGCCGGGGAAGCGGATGATGCTGCCCGGCGCGCGCGTGGTGATCGACCAGCCCTCGCTGC
CCGAGCCGGCCCAGGGACAGCCGAGCGACCTGGAGATCTACGCGAGCGAACTGGTGCGTATGCGCGACCAGTTGGAGGAG
TTCCTCGCCCTGCACAGCGGCCGCTCCAAGGAACAGGTAGCCGCCGACATCGAGCGCGACACCGTGCTGACGGCGCAACA
GGCCCTCGAGTACGGCCTGGTGGACCACATCGTGGAGAACCGGACCGCCACACTGCGCTCCCCCGACGCGAGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

44.211

90.047

0.398
  clpP Streptococcus pneumoniae Rx1

43.299

91.943

0.398
  clpP Streptococcus pneumoniae D39

43.299

91.943

0.398
  clpP Streptococcus pneumoniae R6

43.299

91.943

0.398
  clpP Streptococcus pneumoniae TIGR4

43.299

91.943

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

41.837

92.891

0.389
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.408

90.521

0.384
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

41.026

92.417

0.379
  clpP Streptococcus mutans UA159

41.451

91.469

0.379
  clpP Streptococcus thermophilus LMG 18311

41.451

91.469

0.379
  clpP Streptococcus thermophilus LMD-9

41.451

91.469

0.379
  clpP Streptococcus pyogenes JRS4

40.415

91.469

0.37
  clpP Streptococcus pyogenes MGAS315

40.415

91.469

0.37