Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LL229_RS08205 Genome accession   NZ_CP090823
Coordinates   1569831..1570283 (-) Length   150 a.a.
NCBI ID   WP_010905690.1    Uniprot ID   A0AAC9R1D2
Organism   Lactococcus lactis subsp. lactis strain 229     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1563053..1588007 1569831..1570283 within 0


Gene organization within MGE regions


Location: 1563053..1588007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL229_RS08120 (LL229_1156) - 1563144..1563317 (-) 174 WP_010905703.1 DUF1660 domain-containing protein -
  LL229_RS08125 (LL229_1155) - 1563359..1563544 (-) 186 WP_010905702.1 hypothetical protein -
  LL229_RS08130 (LL229_1154) - 1563591..1563755 (-) 165 WP_010905701.1 hypothetical protein -
  LL229_RS08135 (LL229_1153) - 1563777..1564121 (-) 345 WP_223203818.1 hypothetical protein -
  LL229_RS08140 (LL229_1152) - 1564114..1564611 (-) 498 WP_010905699.1 hypothetical protein -
  LL229_RS08145 (LL229_1151) - 1564614..1565033 (-) 420 WP_010905698.1 dUTP diphosphatase -
  LL229_RS08150 (LL229_1150) - 1565030..1565584 (-) 555 WP_010905358.1 DUF1642 domain-containing protein -
  LL229_RS08155 (LL229_1149) - 1565581..1565853 (-) 273 WP_010905357.1 hypothetical protein -
  LL229_RS08160 (LL229_1148) - 1565846..1566052 (-) 207 WP_010905356.1 DUF1125 domain-containing protein -
  LL229_RS08165 (LL229_1147) - 1566246..1566815 (-) 570 WP_010905697.1 DUF658 family protein -
  LL229_RS08170 (LL229_1146) - 1566805..1566984 (-) 180 WP_010905696.1 DUF1497 domain-containing protein -
  LL229_RS08175 (LL229_1145) - 1567006..1567266 (-) 261 WP_223203848.1 hypothetical protein -
  LL229_RS08180 (LL229_03095) - 1567384..1567623 (-) 240 WP_031297271.1 DUF1031 family protein -
  LL229_RS08185 (LL229_1144) - 1567616..1567810 (-) 195 WP_010905693.1 hypothetical protein -
  LL229_RS08190 (LL229_1143) - 1567813..1568202 (-) 390 WP_002819817.1 RusA family crossover junction endodeoxyribonuclease -
  LL229_RS08195 (LL229_1142) - 1568199..1568924 (-) 726 WP_015966759.1 hypothetical protein -
  LL229_RS08200 (LL229_1141) - 1568924..1569706 (-) 783 WP_015966758.1 phage replisome organiser protein -
  LL229_RS08205 (LL229_1140) ssb 1569831..1570283 (-) 453 WP_010905690.1 single-stranded DNA-binding protein Machinery gene
  LL229_RS08210 (LL229_1139) - 1570283..1570906 (-) 624 WP_010905689.1 DUF1071 domain-containing protein -
  LL229_RS08215 (LL229_1138) - 1570915..1571433 (-) 519 WP_010905688.1 host-nuclease inhibitor Gam family protein -
  LL229_RS08220 (LL229_1137) - 1571549..1571764 (-) 216 WP_015966756.1 DUF1408 domain-containing protein -
  LL229_RS08225 (LL229_1136) - 1571867..1572142 (+) 276 WP_023349243.1 hypothetical protein -
  LL229_RS08230 (LL229_03100) - 1572139..1572333 (-) 195 WP_010905685.1 hypothetical protein -
  LL229_RS08235 (LL229_1134) - 1572471..1572806 (-) 336 WP_003131910.1 DUF771 domain-containing protein -
  LL229_RS08240 (LL229_1133) - 1572819..1573562 (-) 744 WP_010905684.1 ORF6C domain-containing protein -
  LL229_RS08245 (LL229_1132) - 1573599..1573817 (-) 219 WP_010905683.1 DUF739 family protein -
  LL229_RS08250 (LL229_1131) - 1573986..1574528 (+) 543 WP_010905682.1 helix-turn-helix domain-containing protein -
  LL229_RS08255 (LL229_1130) - 1574525..1574962 (+) 438 WP_010905681.1 ImmA/IrrE family metallo-endopeptidase -
  LL229_RS08260 (LL229_1129) - 1575019..1575564 (+) 546 WP_023349242.1 PH domain-containing protein -
  LL229_RS08265 (LL229_1128) - 1575687..1576811 (+) 1125 WP_010905679.1 site-specific integrase -
  LL229_RS08270 (LL229_1127) radC 1577010..1577690 (-) 681 WP_003131898.1 DNA repair protein RadC -
  LL229_RS08275 (LL229_1126) glmS 1577821..1579638 (-) 1818 WP_081172149.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  LL229_RS08280 (LL229_1125) - 1579945..1580835 (+) 891 WP_043736692.1 IS982-like element ISLll1 family transposase -
  LL229_RS08285 (LL229_1124) - 1580836..1581483 (-) 648 WP_081172147.1 phosphatase PAP2 family protein -
  LL229_RS08290 (LL229_1123) - 1581490..1582815 (-) 1326 WP_003131891.1 cell wall metabolism sensor histidine kinase WalK -
  LL229_RS08295 (LL229_1122) - 1582819..1583334 (-) 516 WP_003131889.1 DUF2127 domain-containing protein -
  LL229_RS08300 (LL229_1121) - 1583354..1584040 (-) 687 WP_003131888.1 response regulator transcription factor -
  LL229_RS08305 (LL229_1120) - 1584166..1585122 (-) 957 WP_010905676.1 glycosyltransferase family 2 protein -
  LL229_RS08310 (LL229_1119) - 1585125..1586747 (-) 1623 WP_031296488.1 glycosyltransferase family 39 protein -
  LL229_RS08315 (LL229_1118) - 1586887..1587330 (-) 444 WP_003130996.1 divergent PAP2 family protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16643.67 Da        Isoelectric Point: 8.9728

>NTDB_id=644959 LL229_RS08205 WP_010905690.1 1569831..1570283(-) (ssb) [Lactococcus lactis subsp. lactis strain 229]
MINNVVLVGRLTRDPELRHTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQQAENLAKFAKKGALIGITGRIQTR
NYENQQGQKVYVTEVVADTFQMLESNKTQGQQTSKPQAQNKKPQAPDPFKAPAADPFAGGTEISDDDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=644959 LL229_RS08205 WP_010905690.1 1569831..1570283(-) (ssb) [Lactococcus lactis subsp. lactis strain 229]
ATGATTAATAATGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGACATACACCACAGAACCAAGCAGTAGG
TACATTTGGATTAGCTGTAAATCGCCAGTTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGACAACAAGCCGAAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATTGGAATAACTGGACGGATTCAAACAAGG
AACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGAAAGCAATAA
AACACAAGGTCAGCAAACAAGTAAACCGCAAGCTCAAAATAAAAAGCCACAAGCACCAGACCCTTTTAAAGCTCCTGCTG
CTGATCCATTTGCTGGTGGTACTGAAATTTCAGATGATGACCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.667
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.907

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

69.333

0.407
  ssb Neisseria meningitidis MC58

34.302

100

0.393
  ssb Neisseria gonorrhoeae MS11

33.721

100

0.387
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.381

70

0.367
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.429

70

0.36