Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L0Z67_RS02880 Genome accession   NZ_CP090667
Coordinates   606695..607924 (-) Length   409 a.a.
NCBI ID   WP_237114809.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. PB2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 601695..612924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z67_RS02855 - 602074..602604 (+) 531 WP_062570061.1 Spy/CpxP family protein refolding chaperone -
  L0Z67_RS02860 yacG 602654..602887 (-) 234 WP_062570062.1 DNA gyrase inhibitor YacG -
  L0Z67_RS02865 pilB 602961..604637 (-) 1677 WP_062570063.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L0Z67_RS02870 coaE 604812..605417 (-) 606 WP_237114808.1 dephospho-CoA kinase -
  L0Z67_RS02875 pilD 605420..606316 (-) 897 WP_276574952.1 A24 family peptidase Machinery gene
  L0Z67_RS02880 pilC 606695..607924 (-) 1230 WP_237114809.1 type II secretion system F family protein Machinery gene
  L0Z67_RS02885 - 608154..608573 (-) 420 WP_237114810.1 pilin -
  L0Z67_RS02890 nadC 609067..609915 (-) 849 WP_237114811.1 carboxylating nicotinate-nucleotide diphosphorylase -
  L0Z67_RS02895 ampD 610067..610609 (+) 543 WP_237114812.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  L0Z67_RS02900 ampE 610627..611478 (+) 852 WP_237114813.1 beta-lactamase regulator AmpE -
  L0Z67_RS02905 pdhR 611831..612580 (+) 750 WP_062570071.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44540.66 Da        Isoelectric Point: 9.7046

>NTDB_id=644279 L0Z67_RS02880 WP_237114809.1 606695..607924(-) (pilC) [Pseudoalteromonas sp. PB2-1]
MKKTQENKDIDTFQWVGVNARGKKLEGELSGQSVALIKAQLRKQGITPSKVKRKPKPLFGIKSIQKITAKDIALVTRQIA
TMLMAGVPLIQSIELIASGAKNKSITKLMEDIGDEVKAGAPLSQALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALY
KEKAEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFNGFGAELPAFTLMVIGISEFMQEYWWMILIALVAFG
YAYKEALLKSKKLRDANDRAILKLPVVGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEV
SSGNQMNWAMRNSKIFPDMVVQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIVAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=644279 L0Z67_RS02880 WP_237114809.1 606695..607924(-) (pilC) [Pseudoalteromonas sp. PB2-1]
ATGAAAAAAACACAAGAAAACAAAGATATTGATACCTTTCAGTGGGTTGGTGTTAATGCCAGAGGTAAAAAGCTGGAGGG
TGAATTATCGGGACAAAGTGTTGCTTTAATCAAAGCTCAATTACGTAAACAAGGCATTACCCCGTCAAAAGTAAAGCGTA
AGCCAAAACCTTTATTTGGTATAAAAAGCATTCAAAAAATTACCGCAAAAGATATTGCTCTTGTAACGAGACAGATAGCT
ACAATGTTAATGGCCGGTGTGCCACTCATTCAATCTATCGAATTAATTGCATCTGGCGCTAAGAACAAAAGTATAACAAA
GCTTATGGAGGACATTGGCGACGAAGTCAAGGCTGGTGCTCCATTATCCCAAGCTCTTCGCAAACATCCCCGCTATTTTG
ATGATTTATATTGTGATTTAGTAGCCTCAGGTGAGCAATCGGGTGCTCTTGATAAAATATTTGACCGTGTTGCGCTTTAT
AAAGAAAAAGCCGAAGCGCTAAAATCAAAAATTAAAAAAGCCATGTTTTACCCTATTGCGGTGTTAGTGGTGGCTTTAAT
TGTCACCTCTATCCTACTTATTTTTGTGGTACCGCAATTCCAAGATATTTTTAACGGCTTTGGCGCAGAGCTTCCCGCAT
TTACCTTGATGGTGATCGGTATTTCAGAGTTTATGCAAGAATACTGGTGGATGATACTTATCGCGCTAGTTGCTTTTGGA
TATGCCTATAAAGAAGCCCTTTTAAAAAGTAAAAAACTCAGAGATGCCAACGACAGAGCGATATTAAAGCTCCCTGTTGT
AGGTATGATTTTAAATAAGGCAGCGGTTGCGCGCTACGCACGGACACTCTCAACCACCTTTGCAGCTGGTGTGCCATTGG
TTGATGCCTTAGATTCAGCGGCCGGTGCCTCGGGTAATGCTGTGTATCGCTACGCTATTTTAGAAATTAAAGCCGAGGTG
AGCTCAGGTAATCAAATGAACTGGGCCATGCGTAACTCAAAAATATTCCCCGACATGGTTGTACAAATGGTCGCTATTGG
CGAAGAGTCAGGCTCATTAGATGGGATGCTTGCCAAAGTCGCGACTATTTACGAGCAAGAAGTTGATGATGCGGTCGATG
GCCTTTCAAGTTTACTTGAGCCTTTAATAATGGCTGTATTAGGTGTGCTTGTTGGCGGTTTAATTGTGGCTATGTATTTA
CCAATTTTCCAATTAGGTTCTGTTATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.728

97.066

0.619
  pilC Legionella pneumophila strain ERS1305867

56.03

97.311

0.545
  pilC Acinetobacter baylyi ADP1

54.412

99.756

0.543
  pilC Acinetobacter baumannii D1279779

55.779

97.311

0.543
  pilC Vibrio cholerae strain A1552

44.903

100

0.452
  pilC Vibrio campbellii strain DS40M4

43.641

98.044

0.428
  pilG Neisseria meningitidis 44/76-A

44.501

95.599

0.425
  pilG Neisseria gonorrhoeae MS11

44.246

95.599

0.423