Detailed information NTG0643187

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: LOD78_RS06605
• Genome accession: NZ_CP090522
• Coordinates: 1298895..1299506 (-)
• Length: 203 a.a.
• NCBI ID: WP_274505943.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SS17
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1293895..1304506

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOD78_RS06580 (LOD78_06575)	-	1294275..1295039 (-)	765	WP_274505148.1	ABC transporter ATP-binding protein	-
LOD78_RS06585 (LOD78_06580)	-	1295039..1295986 (-)	948	WP_171989731.1	branched-chain amino acid ABC transporter permease	-
LOD78_RS06590 (LOD78_06585)	-	1295989..1296876 (-)	888	WP_171989732.1	branched-chain amino acid ABC transporter permease	-
LOD78_RS06595 (LOD78_06590)	-	1297157..1298326 (-)	1170	WP_274505149.1	ABC transporter substrate-binding protein	-
LOD78_RS06600 (LOD78_06595)	-	1298491..1298778 (-)	288	WP_174845760.1	DUF2129 domain-containing protein	-
LOD78_RS06605 (LOD78_06600)	clpP	1298895..1299506 (-)	612	WP_274505943.1	ATP-dependent Clp protease proteolytic subunit	Regulator
LOD78_RS06610 (LOD78_06605)	upp	1299607..1300236 (-)	630	WP_024391947.1	uracil phosphoribosyltransferase	-
LOD78_RS06615 (LOD78_06610)	-	1300316..1301932 (-)	1617	WP_274505151.1	alpha-glucosidase	-
LOD78_RS06620 (LOD78_06615)	gtfA	1302004..1303452 (-)	1449	WP_274505153.1	sucrose phosphorylase	-
LOD78_RS06625 (LOD78_06620)	-	1303521..1304351 (-)	831	WP_171989738.1	carbohydrate ABC transporter permease	-

Sequence

Protein

• Length: 203 a.a.
• Molecular weight: 22453.85 Da
• Isoelectric Point: 7.3122

>NTDB_id=643187 LOD78_RS06605 WP_274505943.1 1298895..1299506(-) (clpP) [Streptococcus parasuis strain SS17]
MSKRSKFMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGL
AIVDTMNFIKADVQTIVMGTAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKI
LADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMYDTKTK

Nucleotide

• Length: 612 bp

>NTDB_id=643187 LOD78_RS06605 WP_274505943.1 1298895..1299506(-) (clpP) [Streptococcus parasuis strain SS17]
ATCTCGAAAAGGAGTAAATTTATGATTCCAGTAGTTATTGAACAAACTAGTCGCGGTGAGCGCTCGTATGATATTTATTC
ACGTTTGCTGAAAGACCGCATCATTATGTTGACAGGTCAGGTTGAGGACAATATGGCCAATTCGATTATTGCCCAATTGC
TTTTCCTAGATGCACAAGACCCAACAAAAGATATTTATCTCTATGTAAATACACCTGGGGGTTCTGTTTCTGCAGGTCTT
GCCATCGTGGATACAATGAACTTCATTAAAGCAGACGTACAGACAATTGTAATGGGTACTGCAGCAAGTATGGGAACAAT
CATTGCTTCAAGTGGTACAAAAGGCAAACGTTTCATGCTTCCTAATGCAGAATACCTGATTCACCAACCAATGGGAGGCA
CTGGTGGTGGTACTCAGCAAACTGACATGGCAATTGCAGCAGAACACCTCTTAAAAACTCGTAACAAGTTAGAAAAAATC
TTGGCGGACAATTCTGGTAAGACAGTCAAACAAATCCATAAGGATGCAGAACGTGACTATTGGATGTCTGCTGAAGAAAC
CTTGGCATACGGCTTTATCGACCAAATTATGTACGATACAAAGACTAAGTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (18-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus pyogenes MGAS315	91.327	96.552	0.882
clpP	Streptococcus pyogenes JRS4	91.327	96.552	0.882
clpP	Streptococcus mutans UA159	86.765	100	0.872
clpP	Streptococcus thermophilus LMD-9	87.755	96.552	0.847
clpP	Streptococcus thermophilus LMG 18311	87.755	96.552	0.847
clpP	Streptococcus pneumoniae Rx1	89.474	93.596	0.837
clpP	Streptococcus pneumoniae D39	89.474	93.596	0.837
clpP	Streptococcus pneumoniae R6	89.474	93.596	0.837
clpP	Streptococcus pneumoniae TIGR4	89.474	93.596	0.837
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	83.756	97.044	0.813
clpP	Lactococcus lactis subsp. cremoris KW2	83.249	97.044	0.808
clpP	Bacillus subtilis subsp. subtilis str. 168	57.653	96.552	0.557
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.421	93.596	0.547