Detailed information NTG0643048

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LZ758_RS11080
• Genome accession: NZ_CP090508
• Coordinates: 2376663..2378075 (-)
• Length: 470 a.a.
• NCBI ID: WP_020851962.1
• Uniprot ID: A0A9Q4QU34
• Organism: Xylella fastidiosa subsp. morus strain Riv11
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2371663..2383075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ758_RS11060 (LZ758_11060)	-	2371811..2372257 (+)	447	WP_040123054.1	pilin	-
LZ758_RS11065 (LZ758_11065)	-	2372502..2372729 (-)	228	WP_012338102.1	hypothetical protein	-
LZ758_RS11070 (LZ758_11070)	-	2373562..2373996 (+)	435	WP_038228615.1	pilin	-
LZ758_RS11075 (LZ758_11075)	pilB	2374836..2376569 (+)	1734	WP_012338105.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LZ758_RS11080 (LZ758_11080)	pilR	2376663..2378075 (-)	1413	WP_020851962.1	sigma-54 dependent transcriptional regulator	Regulator
LZ758_RS11085 (LZ758_11085)	-	2378262..2379872 (-)	1611	WP_038228612.1	ATP-binding protein	-
LZ758_RS11090 (LZ758_11090)	sucC	2380127..2381290 (+)	1164	WP_004090371.1	ADP-forming succinate--CoA ligase subunit beta	-
LZ758_RS11095 (LZ758_11095)	sucD	2381319..2382191 (+)	873	WP_038228610.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51368.35 Da
• Isoelectric Point: 7.2158

>NTDB_id=643048 LZ758_RS11080 WP_020851962.1 2376663..2378075(-) (pilR) [Xylella fastidiosa subsp. morus strain Riv11]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERVGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASALVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=643048 LZ758_RS11080 WP_020851962.1 2376663..2378075(-) (pilR) [Xylella fastidiosa subsp. morus strain Riv11]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGTT
TCCGTCACGACTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGTTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCTCACACGCATGGGCGGGCGGTTCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTTCCGATTGTGCCTGTGGACGCATCGGCATTGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAAAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCATTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.635	99.787	0.585
pilR	Acinetobacter baumannii strain A118	46.822	100	0.47