Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IHC92_RS01940 Genome accession   NZ_CP090487
Coordinates   391094..392320 (-) Length   408 a.a.
NCBI ID   WP_237035051.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain AS-15-3942-9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386094..397320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC92_RS01915 (IHC92_01915) mutT 387906..388346 (-) 441 WP_086957272.1 8-oxo-dGTP diphosphatase MutT -
  IHC92_RS01920 (IHC92_01920) yacG 388406..388615 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  IHC92_RS01925 (IHC92_01925) zapD 388624..389361 (-) 738 WP_237035048.1 cell division protein ZapD -
  IHC92_RS01930 (IHC92_01930) coaE 389429..390031 (-) 603 WP_237035049.1 dephospho-CoA kinase -
  IHC92_RS01935 (IHC92_01935) pilD 390033..390911 (-) 879 WP_237035050.1 prepilin peptidase Machinery gene
  IHC92_RS01940 (IHC92_01940) pilC 391094..392320 (-) 1227 WP_237035051.1 type II secretion system F family protein Machinery gene
  IHC92_RS01945 (IHC92_01945) pilB 392386..394077 (-) 1692 WP_237035052.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IHC92_RS01950 (IHC92_01950) - 394087..394515 (-) 429 WP_065170818.1 pilin -
  IHC92_RS01960 (IHC92_01960) ampD 394932..395510 (+) 579 WP_065171772.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IHC92_RS01965 (IHC92_01965) pdhR 395870..396643 (+) 774 WP_065171771.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45076.25 Da        Isoelectric Point: 10.0330

>NTDB_id=642793 IHC92_RS01940 WP_237035051.1 391094..392320(-) (pilC) [Photobacterium damselae subsp. damselae strain AS-15-3942-9]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSLLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAIGLLLTLVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=642793 IHC92_RS01940 WP_237035051.1 391094..392320(-) (pilC) [Photobacterium damselae subsp. damselae strain AS-15-3942-9]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCCTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATTGAATCTGGAGTTCCGATTGTACAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGTGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCACTAAAATCAAGTTCGCTGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTCGGTCAGGTATTTGTTCGCTTAGCCACATATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTATAGGTTTGCTGCTTACACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCCCTACTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGTAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGTCAGTGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAGGA
GTCCGGCTCTCTTGATGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTCTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTGATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Acinetobacter baumannii D1279779

40.441

100

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.049

99.755

0.4
  pilC Acinetobacter baylyi ADP1

39.547

97.304

0.385
  pilC Legionella pneumophila strain ERS1305867

38.442

97.549

0.375