Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IHC93_RS01960 Genome accession   NZ_CP090485
Coordinates   393503..394729 (-) Length   408 a.a.
NCBI ID   WP_106338472.1    Uniprot ID   A0AAD3ZVT0
Organism   Photobacterium damselae subsp. damselae strain AS-16-0963-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388503..399729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC93_RS01935 (IHC93_01935) mutT 390184..390591 (-) 408 WP_069530749.1 8-oxo-dGTP diphosphatase MutT -
  IHC93_RS01940 (IHC93_01940) yacG 390812..391021 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  IHC93_RS01945 (IHC93_01945) zapD 391030..391767 (-) 738 WP_005297594.1 cell division protein ZapD -
  IHC93_RS01950 (IHC93_01950) coaE 391838..392440 (-) 603 WP_237041288.1 dephospho-CoA kinase -
  IHC93_RS01955 (IHC93_01955) pilD 392442..393320 (-) 879 WP_237041289.1 prepilin peptidase Machinery gene
  IHC93_RS01960 (IHC93_01960) pilC 393503..394729 (-) 1227 WP_106338472.1 type II secretion system F family protein Machinery gene
  IHC93_RS01965 (IHC93_01965) pilB 394795..396486 (-) 1692 WP_237041290.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IHC93_RS01970 (IHC93_01970) - 396493..396942 (-) 450 WP_237041291.1 pilin -
  IHC93_RS01975 (IHC93_01975) ampD 397328..397906 (+) 579 WP_237041292.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IHC93_RS01980 (IHC93_01980) pdhR 398266..399039 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45016.15 Da        Isoelectric Point: 10.0330

>NTDB_id=642757 IHC93_RS01960 WP_106338472.1 393503..394729(-) (pilC) [Photobacterium damselae subsp. damselae strain AS-16-0963-1]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=642757 IHC93_RS01960 WP_106338472.1 393503..394729(-) (pilC) [Photobacterium damselae subsp. damselae strain AS-16-0963-1]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACTTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACAGCCATTACTCGCCAACTTGCGACCATG
ATCGAATCAGGGGTCCCAATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGCCATCATAAAGCAGAAGTGCGCGCAGTATT
AACTCAGGTTAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGCTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCGACCGGGGAAGAAACAGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGTGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCTTCGGATTTCCTAATTAACTACGGGGGATATTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTAGGTTAAGCTTACGCCTGCCAATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCTCTACTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGCAACTTACATATAGAAGAGGCCATTATGGAAGCGCATACCAGTGCTGCGGCG
GGGATGCCACTCTATTTATCTTTGCGTCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTAATTGGCGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373