Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LY387_RS15425 Genome accession   NZ_CP090438
Coordinates   3350574..3350987 (+) Length   137 a.a.
NCBI ID   WP_234494724.1    Uniprot ID   -
Organism   Vibrio maritimus strain BH16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3345574..3355987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS15410 - 3346443..3348761 (+) 2319 WP_234494721.1 Tex family protein -
  LY387_RS15415 - 3348858..3349307 (-) 450 WP_234494722.1 ATP-dependent Lon protease -
  LY387_RS15420 bioH 3349442..3350212 (-) 771 WP_234494723.1 pimeloyl-ACP methyl ester esterase BioH -
  LY387_RS15425 comF 3350574..3350987 (+) 414 WP_234494724.1 ComF family protein Machinery gene
  LY387_RS15430 nfuA 3351055..3351681 (+) 627 WP_156111134.1 Fe-S biogenesis protein NfuA -
  LY387_RS15435 nudE 3351864..3352421 (+) 558 WP_234494725.1 ADP compounds hydrolase NudE -
  LY387_RS15440 cysQ 3352423..3353250 (+) 828 WP_042478598.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LY387_RS15445 - 3353330..3354088 (-) 759 WP_419153453.1 type II secretion system protein N -
  LY387_RS15450 - 3354092..3354586 (-) 495 WP_128648810.1 type II secretion system protein M -
  LY387_RS15455 gspL 3354593..3355825 (-) 1233 WP_234494729.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15749.35 Da        Isoelectric Point: 10.0220

>NTDB_id=642455 LY387_RS15425 WP_234494724.1 3350574..3350987(+) (comF) [Vibrio maritimus strain BH16]
MVKPLAQMLSRKIDHPAPLLISVPMLFHHEFLRGFNLSEMMANDIANQFSGSECAHHIFRKHRHTRVQKDLNREERLHNV
RRAFSLKRSPSLKHVAIIDDVVTTGATVRHLSELLLEVGVEKIDIYCLCRTPKSSYG

Nucleotide


Download         Length: 414 bp        

>NTDB_id=642455 LY387_RS15425 WP_234494724.1 3350574..3350987(+) (comF) [Vibrio maritimus strain BH16]
ATGGTTAAGCCACTGGCCCAGATGCTGAGTAGAAAAATAGACCACCCTGCCCCGTTACTGATATCTGTACCCATGCTGTT
TCACCATGAGTTCTTGCGAGGTTTTAATCTGAGTGAAATGATGGCAAACGACATCGCTAACCAGTTCTCTGGCTCAGAGT
GTGCGCATCACATCTTTCGTAAGCACCGCCATACACGTGTTCAGAAGGATCTCAATCGAGAGGAAAGGCTCCACAATGTG
CGCCGAGCATTTTCGCTTAAGCGATCACCCAGTTTGAAACATGTGGCAATAATTGATGATGTGGTCACAACCGGTGCAAC
GGTTCGTCATTTAAGTGAATTATTACTTGAAGTAGGCGTAGAAAAAATTGATATTTACTGTTTATGCCGCACCCCAAAGT
CATCCTACGGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(39-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

50.37

98.54

0.496
  comF Vibrio campbellii strain DS40M4

42.748

95.62

0.409